SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29495

Length: 1586 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29495 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Homeobox-leucine zipper protein HOX11; AltName: Full=HD-ZIP protein HOX11; AltName: Full=Homeodomain transcription factor HOX11; AltName: Full=OsHox11 dbj\|BAD38229.1\| putative homeodomain leucine zipper protein CPHB-3 [Oryza sativa Japonica	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX56

Fln msg:

Fln protein: MEETKNKQRGLERLKTLASDDMTGLALGVGLSMAMPEIARHGDDQKSAPLQLQPLTFRPIATAAGAETAPTPSAPFLWFMSKNCREEVTVAESNLSGIVRGGGIDMNRVPAINESEYSSVFQADALRTIDTGSVVVKRERERTFELEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAVPPQCVIGQDNYYMPLPATTLTMCPSCERVATMENSRNLSFSKSRISQFAQKSAAC*

Protein Length: 319

Fln nts: CTTCCACTACCTGTGGTGTTTTAATTATACTGGTCCGAACTCCATGAGTGCGGCTGCTTATCCTAATCATTCTTGGTAACCTCAATAATTAATCATTCTCGGTCTGCATATTTTATGTATATCTATCAAATATATGCACTGGTCAAGCCATCGAACTTTCAGGCGCGCGTGCACCTACAGCGCCCCACATGATGAGGGATTAGGGGATATGCCCATAATGATGTTTTTATTAACCGGCTCAGATTTGAGAACCAGACTCAGTTGTGCAGTTGTGTGCGATTGTGTTTGAAAGCCTGGCTTCCTTCCTTATTTGTAAGGCTTGTTCTGGAAGTTGAGAGAGGGCGCTTCAGAGCTTGGACTGTTTGGCTGTTGCTGTTCTGGAATCAATTAGGGTTTGACTATTTGATAACAGATTGTATCTCACGTTTATACGACTGGGTTGCTTGACTTTCATCATCCCTGACGTCTGCGAGACGATAAATCTTGGGCAGCACTCTGTGTGAGAGGAGAAGATTATTC_-_ATGGAGGAGACGAAGAATAAGCAGAGAGGTCTGGAGCGGCTGAAGACTTTGGCAAGCGATGATATGACTGGGTTGGCTCTAGGTGTAGGTCTATCCATGGCTATGCCTGAAATAGCTCGGCACGGAGACGATCAGAAAAGCGCTCCGCTGCAACTCCAACCCCTGACCTTTCGTCCCATTGCAACAGCAGCCGGAGCCGAGACTGCTCCGACGCCCTCGGCGCCGTTTCTTTGGTTCATGTCCAAGAACTGCCGGGAAGAGGTAACGGTCGCGGAGTCCAATCTGTCTGGGATCGTACGCGGCGGAGGGATAGACATGAATCGGGTTCCGGCTATCAATGAGTCTGAGTATTCGTCAGTTTTCCAGGCCGATGCCTTGCGGACGATTGACACCGGTTCCGTGGTAGTGAAGCGAGAGCGAGAAAGAACCTTTGAGTTGGAGGCGGAGAGGGATCGAACCTGCGACGTGAGTTCCAGGACAAGCGACGAGGAGGAGATAGGTTCGACGAGGAAAAAGCTTCGGCTTTCCAAGGAGCAGTCTGCACTACTGGAGGAAAGTTTCTTGGAGCACAGCACTCTGAACCCGAAACAGAAGAACGCTTTGGCCAAGGAATTGAATTTGCAACCTCGGCAGGTGGAAGTCTGGTTTCAGAACAGAAGAGCGCGAACAAAGTTGAAGCAGACAGAAGTAGACTGCGAGGTTCTGAAGCGGTGCTGCGAGAATCTAACAGAGGAGAACAGAAGGCTACAGAAAGAACTGCAAGAGCTTAGGGCTCTGAAAGCGGTTCCTCCTCAGTGCGTGATAGGACAGGATAATTACTACATGCCGCTGCCTGCCACCACGCTCACCATGTGTCCCTCCTGTGAAAGGGTGGCTACCATGGAAAACAGCCGTAACCTTTCCTTTTCCAAGTCCCGGATTTCGCAGTTTGCCCAAAAGTCTGCAGCTTGCTAA___CTTTGAGGGGCTTCCTCAGGCCAGGCTTGCCTGCAAAGCTTATCTGTGTAAAATATCATTTGTCAGTGGTAGTTTTTGGTCAGATTTTGAGAGATTTGGCTTCCCTCGAAAAG

Fln Alignment:

AllPineV4_c9545___MEETKNKQRGLERLKTLASDDMTGLALGVGLSMAMPEIAR-HGDDQKSAPLQLQPLTFRPIXXXXXXXXXXXXXXPFLWFMSKNCREEVTVAESNLSGIVRGGGIDMNRVPAINESEYSSVFQADALRTIDTGSVVVKRERERTFELEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAVPPQCVIGQDNYYMPLPATTLTMCPSCERVATMEN--SRNLSFSKSRISQFAQK
A9NX56_______________MEETKNKQRGLERLKTSANDDTTGLALGVGLSIAMPATAAAQEEDQKNPPLPLELLPFRPIASRVGTPPAPSPP--FLWFMTNNCREEVTVAETNLSGVVRGG-IDMNQVPSTNEYEESSVLQVDALRVVDNGPMAVKRERERAFDLEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSHSRSLQFSKSQISRFAQQ

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
706			33	33	0.997753
715		33		66	0.997452
802	20		80		0.995493
803	80		20		0.995493
856	20		80		0.995493
861		40		60	1.0
877			50	50	1.0
900			83	16	0.994512
1024	57		42		1.0
1073	75	25			0.996473
1076	80	20			0.995493
1077	80	20			0.995493
1078		20		80	0.995493
1079	80	20			0.995493
1187		50		50	1.0
1299			75	25	0.996473
1302	75		25		0.996473
1315	75	25			0.996473
1318	75			25	0.996473
1319			33	66	0.997452
1346		33	66		0.997452
1347		33	66		0.997452
1348	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain