SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29490

Length: 594 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29490

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAUR-like auxin-responsive protein [Arabidopsis thaliana] gb\|AAB62852.1\| similar to auxin-induced protein [Arabidopsis thaliana] emb\|CAB80897.1\| AT4g00880 [Arabidopsis thaliana] gb\|AAL36306.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20350.1\| unknown	-	-	1.0e-10	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	auxin responsive family-like protein	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin responsive SAUR protein	IPR003676	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
98		75	25		0.99649
128			50	50	1.0
131	20	20	60		0.992553
132		40		60	1.0
137	80	20			0.995493
139	20	20		60	0.992561
140	60	40			1.0
172		50		50	1.0
178		50		50	1.0
180	50		50		1.0
184		50	50		1.0
190	14	85			0.993533
191	85	14			0.993533
192		14	85		0.993533
193	85			14	0.993533
194	85			14	0.993533
195	85		14		0.993533
200		12	75		0.975346
203		12	12	75	0.975346
204	25			75	1.0
206		12	75	12	0.975346
207		12	75	12	0.975346
208	87			12	0.992554
211		12	87		0.992554
213			12	87	0.992554
214			87	12	0.992554
216	12		87		0.992554
217		12		87	0.992554
218			87	12	0.992554
219		12	87		0.992554
220	12	87			0.992554
221		28		71	1.0
244	85		14		0.993533
245	66		33		1.0
274	14		85		0.993533
305	33	66			1.0
350	71	28			1.0
356		66		33	1.0
390	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain