SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29340

Length: 508 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene29340
CTGCTGATGGACATTGTATCATACTTAGCTTAGATATCAGCAGGGGCCGGGAGAAAAGGAGAATAATGTGCGTAAATGAATATGATGGTACCTGCTTCCCGGATAATTTTTTGTACATTACAAGTTCTGTAATTACAGATGCTGCTCACGTGGATCAGAGCTTATCTAGAATAGGAGACATGCACTGTTCCTGCTCTGGCAACTGTCTCTTGTCATCAACACCTTGCAAGTGTACTGGTGATACGCGGGGTGAATATGCCTATGATAACAATGGCCTTCTCATTCCACGACTAGCTTATAATTATTGCTCTATGGATGGGAGGAAGAATCGAACGGACTTTATTACTGAGTGCAATGTATCTTGCCCTTGTGATTTTTTGAAATGTGGCAATAGAGTTGTACAAAGGGGATTGAAGTACAGACTACAGGTTTTTATGACAAAGGAAGGCAAGGGTTGGGGTGTTCGTAGTTTAGAACCTATAGCAGCACGATCATTTTTGTTTGAATA

Ace file of the UniGene sp_v2.0_unigene29340

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9S5I0_RICCO	-	-	3.0e-27	40%
FL-Next	sp=Histone-lysine N-methyltransferase SUVR4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%
Blast2go	histone-lysine n-methyltransferase suvr4	-	-	1.66614e-32	52%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	1.66614e-32	52%

Source	KEGGs	Term	e value	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.66614e-32	52%
Blast2go	Tetracycline biosynthesis	00253	1.66614e-32	52%
Blast2go	Histidine metabolism	00340	1.66614e-32	52%
Blast2go	Tyrosine metabolism	00350	1.66614e-32	52%
Blast2go	Phenylalanine metabolism	00360	1.66614e-32	52%
Blast2go	Tryptophan metabolism	00380	1.66614e-32	52%
Blast2go	Benzoxazinoid biosynthesis	00402	1.66614e-32	52%
Blast2go	Selenocompound metabolism	00450	1.66614e-32	52%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	1.66614e-32	52%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	1.66614e-32	52%
Blast2go	Methane metabolism	00680	1.66614e-32	52%
Blast2go	Porphyrin and chlorophyll metabolism	00860	1.66614e-32	52%
Blast2go	Carotenoid biosynthesis	00906	1.66614e-32	52%
Blast2go	Phenylpropanoid biosynthesis	00940	1.66614e-32	52%
Blast2go	Flavonoid biosynthesis	00941	1.66614e-32	52%
Blast2go	Anthocyanin biosynthesis	00942	1.66614e-32	52%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.66614e-32	52%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	1.66614e-32	52%
Blast2go	Insect hormone biosynthesis	00981	1.66614e-32	52%
Blast2go	Biosynthesis of type II polyketide products	01057	1.66614e-32	52%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.66614e-32	52%
Blast2go	Metabolic pathways	01100	1.66614e-32	52%
Blast2go	Biosynthesis of secondary metabolites	01110	1.66614e-32	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	chromatin modification	GO:0016568	Biological Process	1.66614e-32	52%
Blast2go	methylation	GO:0032259	Biological Process	1.66614e-32	52%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	1.66614e-32	52%
Blast2go	intracellular non-membrane-bounded organelle	GO:0043232	Cellular Component	1.66614e-32	52%
Blast2go	nucleus	GO:0005634	Cellular Component	1.66614e-32	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W595

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 168 - 492

Fln protein: ADGHCIILSLDISRGREKRRIMCVNEYDGTCFPDNFLYITSSVITDAAHVDQSLSRIGDMHCSCSGNCLLSSTPCKCTGDTRGEYAYDNNGLLIPRLAYNYCSMDGRKNRTDFITECNVSCPCDFLKCGNRVVQRGLKYRLQVFMTKEGKGWGVRSLEPIAARSFLFE

Protein Length: 169

Fln nts: CTGCTGATGGACATTGTATCATACTTAGCTTAGATATCAGCAGGGGCCGGGAGAAAAGGAGAATAATGTGCGTAAATGAATATGATGGTACCTGCTTCCCGGATAATTTTTTGTACATTACAAGTTCTGTAATTACAGATGCTGCTCACGTGGATCAGAGCTTATCTAGAATAGGAGACATGCACTGTTCCTGCTCTGGCAACTGTCTCTTGTCATCAACACCTTGCAAGTGTACTGGTGATACGCGGGGTGAATATGCCTATGATAACAATGGCCTTCTCATTCCACGACTAGCTTATAATTATTGCTCTATGGATGGGAGGAAGAATCGAACGGACTTTATTACTGAGTGCAATGTATCTTGCCCTTGTGATTTTTTGAAATGTGGCAATAGAGTTGTACAAAGGGGATTGAAGTACAGACTACAGGTTTTTATGACAAAGGAAGGCAAGGGTTGGGGTGTTCGTAGTTTAGAACCTATAGCAGCACGATCATTTTTGTTTGAATA

Fln Alignment:

AllPineV4_c8950___DISRGREKRRIMCVNEYDGTCFPDNFLYITSSVITDAAHVDQSLSRIGDMHC--SCSGNCLLSSTPCKCTGDTRGEYAYDNNGLL-----------------IPRLAYNYCSMD-----GRKNRTD------FITECNVSCPCDFLKCGNRVVQRGLKYRLQVFMTKEGKGWGVRSLEPIAARSFLFE
Q8W595_______________DITKGSESVKIPLVDDVGSEAVP-KFTYIPHNIVYQSAYLHVSLARISDEDCCANCKGNCLSADFPCTCARETSGEYAYTKEGLLKEKFLDTCLKMKKEPDSFPKVYCKDCPLERDHDKGTYGKCDGHLIRKFIKECWRKCGCD-MQCGNRVVQRGIRCQLQVYFTQEGKGWGLRTLQDLPKGTFICE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
318	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain