SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29276

Length: 1335 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29276 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01576, Myosin_tail_1, Myosin tail	-	-	7.0e-08	21%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	31%
Blast2go	myosin heavy chain-like protein	-	-	1.32925e-36	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	1.32925e-36	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7SI51

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 57 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 333 - 420

Fln protein: RVVCNVKELKSRGWLLGKPRVYSHARSDSTGSLVIGSDIEELLQLEILCKELRNERDRLQTSLLMEQSKNCDVIKSKEAEFDELNKTWEKDKKRFENLGLELKNFSDHQGHFQEEKEVKNAEANLVAGHILNLDMKLAGSDKLHEKINHLREELAKSEADRLGLKQELEDKNNILQDTVDCMNWSEEHISTNSMKFEHEMQIMRQELVMSEQRCIIAKNDSEQAAKEVKQKVALVKDLKDQLEKAEQMICCLQKSLQFQKYLENSEVKIADFCHYLQDHFDQWLSRENAMKHDSSLESDNNVAVVGRNQLLLDKQSSSSRSDEDLELFFQNW*

Protein Length: 334

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGTTGGTTTTGCTGGTTTACTTTATCATCTCCGGCGGGATTCGGGAGGAAAAGCCAAGCTAGCTGGAAGGTTTCATTAAATGGGTTAATCGAACGTTAGCCGGATCCGCCACGAATCTGCGGAGAAATGGGGCTGTAGGGTGCCAACAGCAGCAGGAGGTTGTTAATCAAGCGCAGAATAAGAAGCAGGGGATTGGACTGAAGGGTGGTCTGCAATGTCAAAGAATTGAAGTCCAGGGGTTGGCTACTTGGCAAACCACGGGTTTATAGTCATGCTAGAAGTGACAGCACTGGGTCTTTGGTAATTGGTTCTGACATTGAAGAACTCTTACAGTTGGAAATTCTTTGTAAGGAGCTGAGAAATGAAAGGGACAGACTACAGACATCATTGTTAATGGAACAGTCAAAGAACTGTGACGTGATCAAGAGTAAGGAAGCAGAGTTTGATGAATTGAACAAAACTTGGGAAAAAGATAAGAAACGATTTGAGAATTTGGGTCTGGAGCTAAAGAACTTCTCAGATCACCAAGGACATTTCCAGGAGGAGAAAGAAGTGAAGAATGCAGAAGCAAATCTAGTTGCTGGGCATATCCTAAATCTTGACATGAAGCTTGCAGGTTCAGATAAATTGCATGAAAAAATCAATCATCTGAGGGAAGAGCTTGCAAAGTCAGAAGCTGACCGCTTAGGTTTAAAGCAAGAGTTAGAAGATAAGAATAATATTTTACAGGACACAGTGGACTGCATGAACTGGTCGGAGGAACATATTTCAACAAATTCTATGAAATTTGAACATGAAATGCAGATTATGAGACAAGAATTGGTGATGTCAGAGCAGAGATGTATCATTGCCAAGAATGACTCTGAACAAGCAGCTAAAGAGGTGAAGCAGAAGGTTGCTTTGGTCAAAGACCTTAAAGATCAACTTGAGAAGGCCGAACAGATGATATGTTGTCTCCAAAAAAGTCTACAATTTCAAAAATACTTGGAAAATTCAGAGGTGAAAATAGCAGACTTTTGTCACTATCTTCAGGATCACTTTGATCAGTGGCTGAGCAGAGAGAATGCAATGAAACATGACAGTAGTTTAGAAAGTGATAACAATGTTGCAGTTGTAGGACGGAACCAATTGTTACTGGATAAACAATCCAGTAGTTCAAGAAGTGATGAAGACCTCGAGCTTTTCTTTCAAAACTGGTGACTGTAAAGAATATGGAGAAATCTCAGGAAGATGTTGGGAGCATGACACAGCAGCTTTCTCAATTGCAGGCTACAGTTTCCCAATTGAAAGAGGAACTTAGAGAAGAG

Fln Alignment:

AllPineV4_c8714___RVYSHARSDSTGSLVIGSDIEELLQLEILCKELRNERDRLQTSLLMEQSKNCDVIKSKEAEFDELNKTWEKDKKRFENLGLELKNFSDHQGHFQEEKEVKNAEANLVAGHILNLDMKLAGSDKLHEKINHLREELAKSEADRLGLKQELEDKNNILQDTVDCMNWSEEHISTNSMKFEHEMQIMRQELVMSEQRCIIAKNDSEQAAKEVKQKVALVKDLKDQLEKAEQMICCLQK-SLQFQKYLENSEVKIADFCHYLQDHFDQWLSR--ENAMKHDSS---LESDNNVA
D7SI51_______________KMFSSSKSESDSSY----DIEDLLQIETRCKQLKRETNMLRES----QSESFELIRRLELHVRTLSEARSEDEKHIQELERELRNCSQEIDYLQDQLNARDAEVKCLGEHVHSLELKLADKDNLEDMVGRLMQELKRSNSECMLLMQELENKEVELQMSSLCIDKLEESISSVTLEFQCEMESMKLEMITLEQSCFEAKKLQDEASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQKIKEHSEEWLENKDESELKTQSSSGELESKFNLS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
710		33	66		0.997452
794		33		66	0.997452
810	66		33		0.997452
887			16	83	0.994512
939	85		14		0.993533
940		14		85	0.993533
1224	83	16			0.994512
1225		16		83	0.994512
1228	16		83		0.994515
1229			83	16	0.994517
1311	75			25	0.996473
1312	75		25		0.996473
1315		75	25		0.996473
1316	75			25	0.996473
1320	75	25			0.996473
1322	75		25		0.996473
1327		80	20		0.995499
1328			20	80	0.995499
1329	75			25	0.996473
1330	75	25			0.996473
1332	25	25			1.0
1333	25		50		1.0
1335		20		80	0.995498

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain