SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29267

Length: 1487 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29267 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	triacylglycerol lipase 1 [Arabidopsis thaliana] sp\|Q71DJ5.1\|LIP1_ARATH RecName: Full=Triacylglycerol lipase 1; Flags: Precursor gb\|AAN77143.1\| putative triacylglycerol/steryl ester hydrolase [Arabidopsis thaliana] gb\|ABF58965.1\| At2g15230 [Arabidopsis tha	-	-	59%
FL-Next	sp=Triacylglycerol lipase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	73%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	73%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		73%
Blast2go	Metabolic pathways	01100		73%
Blast2go	Lipoyl synthase.	EC:2.8.1.8	-	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipoic acid metabolism	00785		0.0	73%
Blast2go	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	lipoate biosynthetic process	GO:0009107	Biological Process	73%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	73%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	73%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	73%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	73%
Blast2go	GTPase activity	GO:0003924	Molecular Function	73%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	73%
Blast2go	lipoate synthase activity	GO:0016992	Molecular Function	73%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q71DJ5

Fln msg: your sequence is shorter than subject: 361 - 393

Fln protein: MGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAFWDWSWEELAGYDLPVMIEFIYSVTESKVFYVGHSQGTIMAFAAFTQPEVVNMVAAAALLSPISYLNHLTSSFARAAVDLHLDQIMNSMGLHQINFRSNMAVQLMDYVCASGGINCSDLLTTITGPNCCFNNSRVDFYLEYEPHPSSTKNIRHLFQMIRKGTFAKYDYGPWGNLKHYGSLNPMDYNLSQIPKSLPLWMAYGGKDALGDLVDVNHTLAQLNSKPVLVYLDSYAHLDFVLSVRAKADLYDSMVDFFKSQSRELFE*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGCCGTATCCAGTTCCAGGAGCCTCAATATGGAGATATCAAAGAGGACGTCGTGACCTTGGCTGTCACTCACCTTATTCAAGCTATCAACAGGGTGTACGCAAGGGAAGTTGATGATGAAGGTCTGTGCTCTCAGTTAATCCGACCT_-_ATGGGTTACCCTTGTACTGAATTCGTGGTGGGTACAGAGGATGGTTTCTTACTAGGAGTGCAGCGTATTCCTTATGGGATCCATGATAGCGGTATTGTAAAAGTTGGCTCAAGGCCTCCAGTGTTTTTACAACATGGACTATTTCAGGGCGGGGACACTTGGTTTCAGAATTCCAGAGAACAGTCTCTAGGATTCATATTAGCAGATTCTGGATTTGATGTTTGGGTTGGAAATGTACGTGGTACACGTTGGAGTCATGGTCATGTCTCTCTTTCAGAACATAGCAAGGCCTTCTGGGATTGGAGTTGGGAAGAATTGGCAGGTTATGATCTTCCAGTTATGATTGAGTTTATATATTCTGTGACAGAGTCGAAAGTATTTTATGTGGGACATTCACAGGGTACTATTATGGCATTTGCTGCTTTTACTCAACCAGAGGTGGTAAATATGGTTGCGGCCGCTGCTCTATTGAGTCCCATATCCTATTTGAATCATCTCACTTCTAGTTTTGCCCGTGCAGCTGTAGACTTGCACCTTGATCAGATTATGAATTCTATGGGACTGCATCAAATCAATTTTAGAAGTAATATGGCTGTCCAGCTTATGGACTATGTATGTGCTTCTGGAGGAATAAACTGCAGCGACCTGCTTACAACTATCACTGGTCCAAATTGTTGTTTCAACAACTCACGCGTTGATTTCTATCTGGAGTATGAGCCTCATCCATCATCTACAAAGAACATTAGACATCTTTTTCAAATGATTCGGAAGGGAACATTTGCAAAGTATGACTATGGACCCTGGGGGAATTTGAAACACTATGGAAGCTTAAATCCGATGGATTATAATCTCTCTCAGATCCCAAAATCACTTCCTTTGTGGATGGCATATGGAGGGAAAGATGCTTTGGGAGATTTGGTGGATGTGAACCACACACTTGCCCAATTGAATAGTAAGCCAGTGTTGGTCTATTTGGACTCCTATGCTCACCTTGATTTTGTTCTGAGTGTACGGGCAAAAGCAGATTTGTATGATTCCATGGTAGACTTCTTTAAATCCCAGTCAAGAGAATTGTTTGAGTAG___TTTGAACACAGAATCAGAAATTTAGCCAATGTAAAGAACCTATAGACCTATTGCGATCTTCATTAAGAGCTTACAGCTTGTTTCTCTACTAAGTGCAATGTCAAGGATTGTATCACTGTACTATATTTTGTATATGGATGTGTATCATATGGAGCATTTCTTGTATATAGACATGTCCATAAATGTATAGATAAAAACACACTCGGATGCCTACGAGATCAAAAAGGT

Fln Alignment:

AllPineV4_c8676___LCSQLIRPMGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAFWDWSWEELAGYDLPVMIEFIYSVTESKVFYVGHSQGTIMAFAAFTQPEVVNMVAAAALLSPISYLNHLTSSFARAAVDLHLDQIMNSMGLHQINFRSNMAVQLMDYVCASGGINCSDLLTTITGPNCCFNNSRVDFYLEYEPHPSSTKNIRHLFQMIRKGTFAKYDYGPWGNLKHYGSLNPMDYNLSQIPKSLPLWMAYGGKDALGDLVDVNHTLAQLNSKPVLVYLDSYAHLDFVLSVRAKADLYDSMVDFFKSQ
Q71DJ5_______________LCADLIHPANYSCTEHSIQTKDGYILALQRVA-----SLGPRLQSGPPVLLQHGLFMAGDVWFLNSPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEFWDWSWQDLAMYDLAEMIQYLYSISNSKIFLVGHSQGTIMSFAALTQPHVAEMVEAAALLCPISYLDHVTAPLVERMVFMHLDQMVVALGLHQINFRSDMLVKLVDSLC-EGHMDCTDFLTSITGTNCCFNASKIEYYLDYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYFKNLRTYGLSKPPEFILSHIPASLPMWMGYGGTDGLADVTDVEHTLAELPSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQFFRAK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
990		83		16	0.994512
1308		83		16	0.994512
1311	83		16		0.994512
1314	16			83	0.994513
1319	83	16			0.994513
1327	80	20			0.995496
1331	20	80			0.995499
1333	80		20		0.995496
1383		25	75		0.996478
1384		25		75	0.996478
1386		75		25	0.996479
1411	33			66	0.997453
1412	33		66		0.997453
1414	33		66		0.997453
1415	33			66	0.997453
1416	33		66		0.997453
1419		66		33	0.997453
1430	33		66		0.997476
1432		66	33		0.997476
1434		66	33		0.997476
1437	33	66			0.997476
1438			66	33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain