SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29214

Length: 1334 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29214 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	C2H2-type zinc finger protein [Arabidopsis thaliana] gb\|AAL55722.1\|AF254447_1 WIP2 protein [Arabidopsis thaliana] emb\|CAB41188.1\| zinc finger-like protein [Arabidopsis thaliana] gb\|AAX12859.1\| At3g57670 [Arabidopsis thaliana] gb\|AEE79685.1\| C2H2-type zinc	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	transparent testa 1	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: your sequence is longer than subject: 291 - 225

Fln protein: MPSLLSIRHLPYAHPISTHNIKPTPPQNEADDYEEEEEPILSLRPPGQTDQALKKSNTQPSYATDQDESDDNVTVALHIGPPTPVSLDCDAVSSVNDGCFQAKERLPMGQYWIPTPSQILVGPTQFSCAVCNKTFNRYNNMQMHMWGHGSQYRKGPDSLRGTKPSAIMRLPCYCCSPGCRNSIDHPRSKPLKDFRTLQTHYKRKHGMKPFACRKCSKAFAVRGDWRTHEKNCGKLWFCMCGSDFKHKRSLKDHIRAFGQGHAPHGVESCEDDDDPAPSEELDDGYSGTSQ*

Protein Length: 292

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCCATATGATAACAGCAACACGCCCACCTACCCCGCCCAGGCAGACTCATCCTCTGTTTTC_-_ATGCCTTCCCTTCTCTCAATTCGTCACCTTCCTTACGCTCATCCCATTTCAACCCACAACATAAAACCCACTCCTCCTCAGAACGAGGCTGATGATTATGAAGAAGAAGAGGAGCCCATCCTCAGTCTGCGGCCGCCTGGCCAGACAGACCAGGCGCTCAAGAAATCCAACACTCAGCCCTCTTACGCCACCGATCAGGACGAATCCGACGACAATGTGACCGTGGCTCTGCATATCGGACCACCAACCCCTGTTTCCCTGGACTGCGACGCGGTTTCAAGCGTTAACGATGGGTGTTTCCAGGCGAAAGAAAGGCTGCCCATGGGTCAATATTGGATCCCCACACCATCTCAGATTCTCGTCGGTCCTACACAGTTTTCCTGCGCTGTCTGTAATAAGACCTTCAATCGTTATAACAATATGCAGATGCACATGTGGGGACATGGATCCCAGTACAGAAAAGGTCCGGACTCGTTGCGAGGAACTAAGCCTTCAGCCATCATGCGGCTGCCATGTTACTGCTGTTCACCGGGTTGCAGAAATAGCATAGACCACCCGCGTTCGAAACCCCTCAAGGACTTCCGAACGCTACAGACCCACTACAAGCGAAAGCACGGCATGAAGCCCTTCGCGTGCCGCAAATGCAGTAAGGCGTTTGCCGTGCGCGGAGACTGGCGCACCCACGAGAAGAACTGCGGCAAACTCTGGTTCTGCATGTGTGGTTCCGATTTCAAGCACAAACGCTCCCTCAAAGACCATATCCGCGCCTTCGGACAGGGTCACGCGCCGCACGGGGTCGAGTCCTGTGAAGACGACGACGACCCGGCACCTTCAGAAGAGCTGGACGATGGTTATTCTGGGACTTCTCAATAG___CAAATGTATGAATTATTTTACAGAAGAACAAGCCTGGCGTTAGGCTATATTTTGTTGCTTCCGGCTGGTCTAACTTTTTTTTTCAGAAATTGGGCCGCGAGCAACTTTCAAGCATACATAATCTCGAACTGAAGATTAGACCACAAATCCTGTAAAATATATATTAGATAATGTATTTAATCACTGGTAGCGCAATGTTTTGTATTCAGTCAATACGGGCAATGTCCAAATGTTGATAGGCCACTGCCTGTCTGCAAATATAACAGAAAAGCATGGATTGCTACAAACTTACTACGTTGTACACGCACATTCACCTTCACATTCTGTAAGTAAATTTTGCAGTTCCAATGACAATTAGACACATGCATTCCATT

Fln Alignment:

AllPineV4_c8491___VALHIGPPTPVSLDCDAVSSVNDGCFQAKE-----------RLPMGQYWIPTPSQILVGPTQFSCAVCNKTFNRYNNMQMHMWGHGSQYRKGPDSLRGTKPSAIM-RLPCYCCSPGCRNSIDHPRSKPLKDFRTLQTHYKRKHGMKPFACRKCSKAFAVRGDWRTHEKNCGKLWFCMCGSDFKHKRSLKDHIRAFGQGHAPHGVESCEDDDDPAPSEEL
A9NQR7_______________VSLQIGPPNSLSEKSELTLKSTDSSDADKESIVQPRSEGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAILLRLPCYCCTQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCCKCNKTFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRAFGQGHAPIAPDSFEDEEDLGSEDEV

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
476	11	88			0.923566
542		85	14		0.993533
543	85			14	0.993533
551	83			16	0.994512
552	14		85		0.993536
553	85		14		0.993536
557	14			85	0.993537
558		16	16	66	0.988813
559	16		83		0.994512
560	14	85			0.993536
561	20	80			0.995493
568			20	80	0.995498
571	20			80	0.995498
572		20		80	0.995498
573		80	20		0.995498
574	20			80	0.995498
676		66		33	0.997452
678	33		66		0.997452
679	66		33		0.997452
680	66			33	0.997452
682	33			66	0.997452
684	33	66			0.997452
685			33	66	0.997452
686		33		66	0.997452
687		33	66		0.997452
690	33		66		0.997459
694		33		66	0.997452
695	33			66	0.997452
748			66	33	0.997452
753		66		33	0.997452
754		66	33		0.997452
755	33		66		0.997452
759		33		66	0.997452
760		33	66		0.997452
762	33			66	0.997452
767		33	66		0.997453
769	66	33			0.997453
771	33		66		0.997452
773			33	66	0.997452
842			25	75	0.996473
843		25		75	0.996473
845	25			75	0.996473
846	25			75	0.996473
970		75	25		0.996486
1093		12		87	0.992554
1094	12			87	0.992554
1098	12		87		0.992554
1100			11	88	0.923834
1101			11	88	0.923834
1104	11			88	0.92373
1105		11		88	0.92373
1147		50		50	1.0
1229		75		25	0.996473
1231	25			75	0.996473
1232	75	25			0.996473
1236		25	75		0.996473
1244		20	80		0.995498
1250	75	25			0.996473
1251	80	20			0.995498
1252	20		20	60	0.992572
1253			25	75	0.996476
1255	75			25	0.996476
1256		25	75		0.996476
1261	75	25			0.996476
1275	66	33			0.997476
1277	66		33		0.997476
1286		33	66		0.997461
1290	33			66	0.997461

SSRs (tot: 1)

Start position	End position	Sequence	Length
426	437	GTC GTC GTC GTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain