SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29163

Length: 537 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene29163
TCCTCCAACACGGCTTGACGTCGTGACCTTGGCTGTCACTCATTTAATCACTGAGTTAGCAAAGGAGAAGCTTGAGGCAGGGCAACCGCTGGAGGCATTTGCAATTCTGTTGGTTTGCTTAGCAATTTGGAAGCAAGCATTGCGTGTAAGTCATACTTGGGCTGCCTCATTTCAAGAAAGTTCTCCCTGTGAGGGACTTGTGCACAGTCAAGACATGCACGAGGAAGGTGATTCCCAAGGGGCAGCTGCTGCTTGTTCACAAATGGAACAAAAATTTTCGAGTGCTGTGGATAATGCTGTGCAACTTGCTAGTCATCTTGGACCGTTGGATGCTGATGCAGAAATGCCAGATGCAATGGAGATTTTGTTCCAGACAGCATTAGCATTCGGAAAGAAAGGAGCTATGGAGGAACTATTTGGAGCGATGGATAATGCAGCAGCATTATATTTGAAATCCACGACTTTACTGTCATTTATTTTGGTTGAAGCTTCATCCCTAGAACTGAAAAATCCACCTTTTTCTCCAAGCATTTCTGA

Ace file of the UniGene sp_v2.0_unigene29163

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	unc51-like kinase [Arabidopsis thaliana] gb\|AAX12876.1\| At2g37840 [Arabidopsis thaliana] gb\|AEC09456.1\| unc51-like kinase [Arabidopsis thaliana]	-	-	8.0e-23	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8H6

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 178 - 448

Fln protein: PPTRLDVVTLAVTHLITELAKEKLEAGQPLEAFAILLVCLAIWKQALRVSHTWAASFQESSPCEGLVHSQDMHEEGDSQGAAAACSQMEQKFSSAVDNAVQLASHLGPLDADAEMPDAMEILFQTALAFGKKGAMEELFGAMDNAAALYLKSTTLLSFILVEASSLELKNPPFSPSIS

Protein Length: 179

Fln nts: TCCTCCAACACGGCTTGACGTCGTGACCTTGGCTGTCACTCATTTAATCACTGAGTTAGCAAAGGAGAAGCTTGAGGCAGGGCAACCGCTGGAGGCATTTGCAATTCTGTTGGTTTGCTTAGCAATTTGGAAGCAAGCATTGCGTGTAAGTCATACTTGGGCTGCCTCATTTCAAGAAAGTTCTCCCTGTGAGGGACTTGTGCACAGTCAAGACATGCACGAGGAAGGTGATTCCCAAGGGGCAGCTGCTGCTTGTTCACAAATGGAACAAAAATTTTCGAGTGCTGTGGATAATGCTGTGCAACTTGCTAGTCATCTTGGACCGTTGGATGCTGATGCAGAAATGCCAGATGCAATGGAGATTTTGTTCCAGACAGCATTAGCATTCGGAAAGAAAGGAGCTATGGAGGAACTATTTGGAGCGATGGATAATGCAGCAGCATTATATTTGAAATCCACGACTTTACTGTCATTTATTTTGGTTGAAGCTTCATCCCTAGAACTGAAAAATCCACCTTTTTCTCCAAGCATTTCTGA

Fln Alignment:

AllPineV4_c8312___PPTRLDVVTLAVTHLITELAKEKLEAGQPLEAFAILLVCLAIWKQALRVSHTWAASFQESSPCEGLV-HSQDMHEEGDSQGAAAACSQMEQKFSSAVDNAVQLASHLGPLDADAEMPDAMEILFQTALAFGKKGAMEELFGAMDNAAALYLKSTTLLSFILVEASSLELKNPPFSPSIS
D5A8H6_______________PPTRLDVLRKCA-YLITELAKEKLEAGQQLEAFAILLVCLAIWKQALRVSHTWAASFAESSPCEGLVVHSRDVHEEGDFQGAAAACSQMEQEFLRAVESAEQLAHHLGPLDGNAEMPDAMEIVFQTALTFGKKGAMDELFGEVDNAAALYLKSTTILSFILVEASSLEL-NPPFSLSIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain