SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29141

Length: 1318 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29141

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Glycine max RepID=C6T196_SOYBN	-	-	2.0e-15	37%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	8.14455e-18	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQX9

Fln msg:

Fln protein: MAMERSHVILIIPILVLIMVGPTNSVQTTSTSSLGNDCVNQLFGLYPCLGFVTNGKVNTVSPQCCSALEATVNANVMCLCLLFTNNSEILGLSINQTQALLLPTLCKIVVPPVSTCKNVANDVLGAPVNDSPPVPKNLASGNRRLSPEDIHMSATQSVTSGTTSKTFEEPIKGKS*

Protein Length: 177

Fln nts: AAAAAGAGTAAGAATGAACTTGAACACCGAAACATGCAAGTAATTCCTGTTAACTCATCATCCATTCACCTTAACTCAACTTAACATCAACAACGAACTTTGGGTAACAAATGAAATGGCTCCTCATTCCACACAAGTCTATTCTACTCGCCTCGTTCAACCCAAGTGTTCAATTGCGTGCAGAGAAACCATTCCAGTAGTGTGTTATACATTAGAACAGGTGCTTCACCGAAAGTTACACTAAAGAAATATGGTTTATAAATCTTTTTATTGTTAAATTAGGAAACTAAGCTGAGAGTATTTTTTGCATTCAAGTGCTAGTTAAGTATAATTTCTGATAGATTTATCTAGCGTAACAAATGTTAAGTCTCTACCATTTCTCTTTATTTATAGTCTCTACCATTGTGTTTCAAATACTTACATTTACGGTGCAGGGAAACATTTTTTAGATATTTGTGTTTAAGGTGCGTGCAGACATTTCA_-_ATGGCAATGGAAAGAAGCCATGTTATTCTCATAATCCCCATTTTGGTCCTGATTATGGTTGGGCCAACAAATTCAGTGCAGACTACCTCTACCTCTAGTCTTGGAAATGATTGTGTAAACCAGTTATTCGGCTTATATCCCTGCCTTGGTTTTGTCACCAATGGAAAAGTCAACACCGTCAGCCCCCAGTGTTGCTCTGCCCTTGAGGCAACAGTGAATGCCAATGTCATGTGCCTATGCCTCCTCTTTACCAATAACAGTGAGATTCTTGGACTTTCAATTAATCAAACACAAGCTCTCCTCCTCCCTACTCTCTGCAAAATTGTTGTGCCGCCTGTTAGCACATGCAAGAATGTGGCAAATGATGTCCTCGGTGCGCCAGTTAATGATTCTCCTCCAGTTCCAAAAAACCTCGCCAGTGGAAATCGAAGACTTTCACCAGAGGATATTCATATGTCTGCAACTCAATCAGTTACATCTGGAACTACATCAAAGACTTTTGAAGAACCTATCAAAGGGAAGAGTTGA___TATGTTTTAGAATCATGGAACGCAATTTTTGTGATTGGCATGTAATAAGTTATATTCTTAGCCCTTTTTATTTGGCTAAGTTTTATAACAAAATATTTGTTGAATTTTAAGCCTAGGTATTAATTTTGGAGGCACGCTTCTGTTTGTGTTAAGATCATATCTGTTTCATAGTGATATGTAAATCAAATTTTCCATCAACTGCGTCCATGCTGGAGTGAAATGTTGTTTGATGTGTTGGAAAATTATAGATTGTAATTCAGGTGGATTATATATAATATAATTAACAAAAACGGTGCAAGTAATTTACT

Fln Alignment:

AllPineV4_c8232___SVQTTSTSSLGNDCVNQLFGLYPCLGFVTNGKVNTVSPQCCSALEATVNANVMCLCLLFTNNSEILGLSINQTQALLLPTLCKIVVPPVSTCKNVANDVLGAPVNDSPPVPKNLASGN
C0PQX9_______________AVTDIAVAQAPSGCSSALVSLAPCIGYVT-GSAPKPSDRCCSGLTNVVNTNPVCLCQLFSGGNNV-GVNVNQTLALAMPAACKVSTPPLSSCKAAGVPV---PPISSPPSPKVPSTGS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
269			33	66	1.0
355			87	12	0.992554
361	75	25			1.0
427		16		83	0.994512
495	83			16	0.994512
505	16		83		0.994512
613		10		90	0.90298
689		87		12	0.992554
701	88		11		0.991528
889			12	87	0.992554
891	25	62			1.0
893	62	37			1.0
895	85			14	0.993534
896	85			14	0.993534
897	85			14	0.993534
898	85		14		0.993534
899		62		37	1.0
900		87	12		0.992554
902	42	57			1.0
931	87		12		0.992554
1040	20	80			0.995498
1041	80	20			0.995498
1205	75			25	0.996474
1266	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain