SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29071

Length: 507 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene29071
CAAATAATGCTGTCTTGCTAGCTATAATGGTTCTCTACTCTTATATCTGATAGCCACATGAAAGTCGTTGACATTATTCCAGATGATACCAAAGTGGTGAGCGCCTCAGATATCTTGAATATATTGCAACATTCGGGCAAAGCGGCCATTGGTTTTGGAGCTGGGTTCAGTGTGAAAGCATCAGTAGAAAGAGCTGCTTTTGACTGCCCTTTTTCTTAGTGGTAGTTTGATTCAGGAAATAAACAATGTAGTTATTTCTGTTACCAGTGCACAGAGCATGGATGAAAGAGATATACAGGCTGCTATACGTGCTTTTCGTCAAATAGCAAAGTCTAGTGCACAAATTATATGTTCAACTATACTTGAAACTGCATTAGAGCCTAATGTCATCGTTTCAACAATCATCGTTACTGGGCTTGATAGACATGAATCAACCCCAAAGATGAATTTTTGGTCGCAACTATCATTGAGTCTGCGCTTTCCCTTCTCACTTTTTCGGGATGGCTT

Ace file of the UniGene sp_v2.0_unigene29071 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP binding protein [Arabidopsis thaliana] sp\|Q6F6B5.2\|ARC3_ARATH RecName: Full=Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3; Flags: Precursor gb\|AEE35661.1\| GTP binding protein [Arabidopsis thaliana]	-	-	2.0e-10	40%
FL-Next	sp=Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	gtp binding protein	-	-	1.34752e-10	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	1.34752e-10	63%
Blast2go	protein self-association	GO:0043621	Molecular Function	1.34752e-10	63%
Blast2go	extrinsic to plastid membrane	GO:0035452	Cellular Component	1.34752e-10	63%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.34752e-10	63%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	1.34752e-10	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6F6B5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 342 aas, your sequence is shorter than subject: 73 - 741

Fln protein: QIMLSC*L*WFSTLISDSHMKVVDIIPDDTKVVSASDILNILQHSGKAAIGFGAGFSVKASVERAAFDCPFS*

Protein Length: 74

Fln nts: CAAATAATGCTGTCTTGCTAGCTATAATGGTTCTCTACTCTTATATCTGATAGCCACATGAAAGTCGTTGACATTATTCCAGATGATACCAAAGTGGTGAGCGCCTCAGATATCTTGAATATATTGCAACATTCGGGCAAAGCGGCCATTGGTTTTGGAGCTGGGTTCAGTGTGAAAGCATCAGTAGAAAGAGCTGCTTTTGACTGCCCTTTTTCTTAGTGGTAGTTTGATTCAGGAAATAAACAATGTAGTTATTTCTGTTACCAGTGCACAGAGCATGGATGAAAGAGATATACAGGCTGCTATACGTGCTTTTCGTCAAATAGCAAAGTCTAGTGCACAAATTATATGTTCAACTATACTTGAAACTGCATTAGAGCCTAATGTCATCGTTTCAACAATCATCGTTACTGGGCTTGATAGACATGAATCAACCCCAAAGATGAATTTTTGGTCGCAACTATCATTGAGTCTGCGCTTTCCCTTCTCACTTTTTCGGGATGGCTT

Fln Alignment:

AllPineV4_c7937___STLISDSHMKVVDIIPDDTKVVSASDILNILQHSGKAAIGFGAGFSVKASVERAAFDCPF
Q6F6B5_______________SALISGMHGNFIDVMHKDLKELEGSEVKTILESYKEAKVGFGVGHNLKTSILRAIYDCPF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
302		16	83		0.994513
303			83	16	0.994513
322	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain