SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29060

Length: 877 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29060

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA export 1 [Nicotiana benthamiana]	-	-	1.96182e-44	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	rae1-like protein at1g80670	-	-	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
20	66		33		0.997452
21			33	66	0.997452
25	33		66		0.997476
46			33	66	0.997453
52	75			25	0.996481
53	75			25	0.996473
54		75	25		0.996473
55		75	25		0.996473
56			25	75	0.996473
59	75			25	0.996477
60		75		25	0.996476
134		66	33		0.997452
284	80		20		0.995493
339	33		66		1.0
345	80		20		0.995493
382	83		16		0.994512
390	83		16		0.994512
462		85		14	0.993533
466		14		85	0.993533
588	5	83			0.999887
740		62		37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain