SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29046

Length: 538 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene29046
AATGTCCATTGCCCGAAGAAATTGGAAAGCTCAGGTACCTTCAGAACCTTGATTTATCTTTTAATTCATTTGTGGGCATCATTCCCCCGGCAATCAACAATTGCACTAGATTGAGGAGGCTGGTTTTGAACAATAACAATTTTTCGGGGCTGCTTCCTCGAGGAATGGGAAACAGTCTCCCCATTCTCCAACAGTTGGACTTATCATACAATCTCCTCAATGGATCCATTCCTCCTGATCTTGGTAATCTAACCCATCTTCAAAGCACTCTGCAGCTCTCCAACAACTTCTTTACAGGCTCAATCCCTGCAAGTTTTGGCAATCTGCCTGAAAAGGTAAGCATAGATCTTACTTACAACAAGCTCACTGGAGCTATTCCTCAGAATGGAGCCTTAGCTAATCAGGGCCCAACAGCGTTTCTGGGAAACCCTGGTCTCTGTGGTTCACCCCTGCAAAAATCATGCCCAACTCCTCCGACTTCTTCCAGCATTCCCAATCTGCCCAATTTAGGTCCTTCACATACAGGCCCATCGGTGGA

Ace file of the UniGene sp_v2.0_unigene29046

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AAG28814.1\|AC079374_17 unknown protein [Arabidopsis thaliana] gb\|AAL08297.1\| At1g25320/F4F7_17 [Arabidopsis thaliana] gb\|AAQ65094.1\| At1g25320/F4F7_17 [Arabidopsis thaliana] gb\|ACN5	-	-	3.0e-40	56%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%
Blast2go	probable inactive leucine-rich repeat receptor-like protein kinase at1g66830-like	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	72%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Asparaginase/glutaminase	IPR006034	-	-
Sma3	Tumour necrosis factor	IPR006052	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF1242	IPR009653	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 666 aas, your sequence is shorter than subject: 178 - 998

Fln protein: CPLPEEIGKLRYLQNLDLSFNSFVGIIPPAINNCTRLRRLVLNNNNFSGLLPRGMGNSLPILQQLDLSYNLLNGSIPPDLGNLTHLQSTLQLSNNFFTGSIPASFGNLPEKVSIDLTYNKLTGAIPQNGALANQGPTAFLGNPGLCGSPLQKSCPTPPTSSSIPNLPNLGPSHTGPSV

Protein Length: 179

Fln nts: AATGTCCATTGCCCGAAGAAATTGGAAAGCTCAGGTACCTTCAGAACCTTGATTTATCTTTTAATTCATTTGTGGGCATCATTCCCCCGGCAATCAACAATTGCACTAGATTGAGGAGGCTGGTTTTGAACAATAACAATTTTTCGGGGCTGCTTCCTCGAGGAATGGGAAACAGTCTCCCCATTCTCCAACAGTTGGACTTATCATACAATCTCCTCAATGGATCCATTCCTCCTGATCTTGGTAATCTAACCCATCTTCAAAGCACTCTGCAGCTCTCCAACAACTTCTTTACAGGCTCAATCCCTGCAAGTTTTGGCAATCTGCCTGAAAAGGTAAGCATAGATCTTACTTACAACAAGCTCACTGGAGCTATTCCTCAGAATGGAGCCTTAGCTAATCAGGGCCCAACAGCGTTTCTGGGAAACCCTGGTCTCTGTGGTTCACCCCTGCAAAAATCATGCCCAACTCCTCCGACTTCTTCCAGCATTCCCAATCTGCCCAATTTAGGTCCTTCACATACAGGCCCATCGGTGGA

Fln Alignment:

AllPineV4_c7817___PLPEEIGKLRYLQNLDLSFNSFVGIIPPAIXXXXXXXXXXXXXXXFSGLLPRGMGNSLPILQQLDLSYNLLNGSIPPDLGNLTHLQSTLQLSNNFFTGSIPASFGNLPEKVSIDLTYNKLTGAIP
Q19AV8_______________PIPPAFGQLLELQVLNLVFNLLNTTIPPFLGNLPNLLQFNLAYNPFTGTVPPELGN-LTKLQNLWLAGCNLVGEIPETLGNLAEL-TNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
321		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain