SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29033

Length: 1492 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene29033 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF506 domain containing protein	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF506, plant	IPR006502	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNR3

Fln msg: your sequence is shorter than subject: 330 - 486

Fln protein: AGPVNETVKEGDHKEMQKKSEDSSSGSDHGSECTSFTDMVCGLMDFDEEMCSRCNCSNGDGESCSENEPEDAYSTQKLESVVSCTTATELHLLGCITDAMANQDSVEVNSSRSFLRRSVMMHLKALGYNAAICKSRWESSRDFPSGEYEYLDVIMEKRKGTFTERFLVDIDFRAQFEMARPTREYSAMVELLPNIFVGKAEKINQIIKIMCDAAKRSLKKKTMHIPPWRKYRYMKPKWLGSYRRTTNPVPASNSSLPRSSRTFNPAGAMGNKCLEISFHPLVLGEWKPPSVNPQSKNPAMNAGGKISGLASALIQAGLANSVSKIQPTH*

Protein Length: 331

Fln nts: GGCTGGTCCTGTGAATGAGACTGTGAAAGAAGGGGATCATAAGGAGATGCAGAAGAAGAGCGAGGATTCAAGCAGTGGGAGCGATCATGGATCGGAGTGTACCTCCTTTACTGATATGGTCTGTGGCTTAATGGATTTTGATGAAGAAATGTGTTCTCGCTGTAATTGCTCAAATGGCGATGGCGAATCCTGTTCTGAGAATGAGCCTGAGGATGCTTACTCCACTCAGAAACTAGAAAGTGTAGTTTCTTGCACGACTGCAACAGAGTTGCATTTGCTGGGCTGTATAACGGACGCCATGGCTAATCAGGATAGCGTGGAGGTGAATAGCAGTAGGAGCTTTCTGCGCCGGTCAGTCATGATGCACTTGAAAGCGTTGGGATACAATGCGGCGATATGTAAATCGCGATGGGAGAGTAGCAGAGATTTTCCTTCAGGTGAATACGAGTACTTGGACGTAATAATGGAGAAAAGGAAAGGGACATTTACAGAGAGATTCTTGGTGGACATAGATTTCAGAGCGCAGTTCGAAATGGCAAGGCCGACTAGAGAATACAGCGCCATGGTGGAACTTCTCCCAAATATATTCGTTGGAAAAGCGGAGAAAATCAATCAGATTATCAAAATAATGTGCGACGCGGCGAAACGATCTCTGAAGAAGAAAACGATGCACATTCCGCCATGGAGGAAGTACCGTTACATGAAGCCAAAATGGTTGGGATCTTACAGGAGGACCACCAACCCTGTTCCAGCTTCCAATTCAAGCCTCCCCCGCTCGTCCAGGACCTTTAACCCGGCAGGGGCTATGGGAAACAAATGTCTCGAGATCAGTTTTCATCCCCTGGTTCTCGGAGAATGGAAGCCTCCTTCAGTTAATCCTCAATCCAAGAACCCTGCCATGAATGCAGGTGGCAAGATTTCGGGATTGGCAAGCGCCTTGATACAGGCGGGCCTTGCAAATTCCGTCTCCAAAATTCAGCCTACGCACTAA___TAGGTTTCTGCTCTGTGTGTCCGTGCACTATAACTAGAATCAAATCAAAGCTGAAACAAATAAGCGCTCATCCACGGGTTAATCTTTAGGACTGTGACATGAATTACGAATCTGATCAATGCTTTTGATAGAATTTAATATCCTTCTCCTTCAACAGCCCAGGACGAAAATAACGCATAGTAGCCGCCTGCAGGTTTATTGTTGTCAGTAGTTTCATGGTTTCCTGTCAATTTTTTTCCTCATTTTAACCGAGCAGAGATTGTACAGAGTGTAGATTTCTTAAGAATCTAAGCGGTAAAACATACAAGTTTTTTCTGTAAATTTCGGTAGAGAGCTTAATTAAACCAGCCCATTAAAAATGGCGTCTACCAGACTTGACAGCAGAGACATTTTTGCAGATATATTTCTAGTTTCCATTGCAGACCTGACAAGAGTTAATGTCCATCGATTGACCGTGAAGTAGATTGATTTCAATCTAAAATTCTGTTGATTTGAATCTAA

Fln Alignment:

AllPineV4_c7733___DMVCGLMDFDEE---------MC--SRCNCSNGDGESCSENE--------------PEDAYST-------QKLESVVSCTTATELHLL---GCITDAMANQDSVE--------VNSSRSFLRRSVMMHLKALGYNAAICKSRWESSRDFPSGEYEYLDVIMEKRKGTFTERFLVDIDFRAQFEMARPTREYSAMVELLPNIFVGKAEKINQIIKIMCDAAKRSLKKKTMHIPPWRKYRYMKPKWLGSYRRTTNPVPASN-------SSLPRSSRTFNPAGA-----------------MGNKCLEISFHP----LVLGE-WKPPSVNPQSKNPAMNAGGKISGLASALIQAGLANSV
B8LNR3_______________DMVYGFMEEEDEGGMENNEVGNCGRSRCNCLNGTGEPCSDNNAEVESVDGDSNSGIPEDDFNEFFSADLKEILEGLFSSSINNPVEFLLHKEAVRALEINQNEVENPNANKQEIIDQRSWLRRSVMNYLRGLGYNAGICKSRWEHIGGFPAGNYEYIDVIIDG------ERFFVDIDFRVQFEIARPTTVFDALLRVLPNVYVGKAERLKQVIKIMCDSSKKSLKKMGMHLPPWRKYRYLQAKWFGPYKRTSNAVASSSPDTYSNESSLARELGSIALKGTGWDHQFKHQMELTIHFEKGNSRLKLRPNSADEIIIVGTGWTPPVLTPRPVSHA-----KISGLACALSEAGLTCSL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1084	33	66			1.0
1087		33	66		1.0
1088			33	66	1.0
1143		66		33	1.0
1171	66		33		1.0
1208		50		50	1.0
1220	83	16			0.994512
1383	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain