SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene29011

Length: 1098 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene29011

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase-like protein [Arabidopsis thaliana] sp\|Q940V3.1\|U91A1_ARATH RecName: Full=UDP-glycosyltransferase 91A1 gb\|AAK96560.1\| At2g22590/T9I22.3 [Arabidopsis thaliana] gb\|AAL36076.1\| At2g22590/T9I22.3 [Arabidopsis thaliana] gb\|AEC07325.1\| U	-	-	8.99998e-41	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI0

Fln msg: your sequence is shorter than subject: 322 - 476

Fln protein: AMDGMEKPFRSLLGQLSPDYLVHDFGFPSSTVSFRLYEAQDILVMYSGMPGHVPPIYRLSKSLEGCVAVAVKSCFGYEDKYIHYLQNAIGVPVLSVGPLMPNVQPVAGSGEGSDLLKWLDTQRPASVVFVSFGSETFLSREQAGVIAFGLEMSGVSFLWSLRTPQYLDDPPELLPEGFETRTRDRGLVARCWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRLDHGLNARQITMELQAGIEIERGDDGSFSKESICRAVKMIMEGEEGKNMKSKAVEAQDIVVGSTGRQQSYIYDFIQHLAGVQDTEKTTQ*

Protein Length: 323

Fln nts: GCCATGGACGGCATGGAGAAGCCGTTCCGAAGCCTGCTCGGGCAGCTGTCGCCGGATTATCTCGTCCACGACTTCGGATTCCCGTCGTCCACGGTCTCGTTCAGGCTGTACGAAGCGCAGGACATTTTAGTTATGTACAGCGGAATGCCCGGGCACGTTCCTCCGATCTATCGGCTTTCTAAATCGCTGGAAGGATGCGTAGCGGTCGCTGTGAAATCCTGCTTCGGATACGAAGATAAGTATATTCACTATTTGCAGAACGCCATCGGAGTCCCCGTACTCTCGGTCGGCCCGCTCATGCCCAACGTGCAGCCCGTTGCTGGCAGCGGCGAGGGCTCCGATCTACTGAAATGGCTTGACACTCAGAGGCCGGCCTCGGTGGTGTTTGTGTCGTTCGGCAGCGAGACGTTCCTGTCGAGAGAGCAAGCTGGCGTGATAGCGTTTGGCTTGGAGATGAGCGGGGTCTCGTTCCTCTGGTCGCTGCGCACTCCACAGTACTTGGACGATCCCCCTGAGCTCCTTCCCGAGGGATTCGAGACTCGAACTCGGGACCGTGGATTAGTGGCCCGGTGCTGGGTGCCGCAGATGCGTATCCTTTCGCACGGGTCAATCGGTGGGTATCTGAGCCACGGCGGGTGGAGCTCCGCCATGGAGGCGCTGAGCTGTGGATTGCCCCTCATTCTCCTGCCTTTAAGGCTTGACCATGGTTTGAATGCTCGCCAAATAACGATGGAATTGCAGGCGGGGATAGAGATCGAAAGGGGTGACGATGGATCCTTCAGCAAAGAAAGTATATGCAGAGCAGTTAAAATGATAATGGAGGGAGAAGAGGGGAAGAACATGAAGTCGAAAGCAGTGGAGGCCCAAGACATTGTGGTGGGCAGTACAGGGCGCCAGCAGAGTTACATCTATGACTTTATCCAACACTTGGCAGGAGTACAGGACACGGAGAAAACAACGCAGTAG___ACACGGTCTGTTTTTTGTTCTGAAAACATAAAATAAGTGTTTCATAGAACAGAGTGCTTTTATTCCTGTGTTTATATTTCAGAAACGCTGTAGAACCTATCAAACAGCCGCTAGGCGAGTAGGCTGTATATT

Fln Alignment:

AllPineV4_c7663___AMDGMEKPFRSLLGQLSPDYLVHDF---------------------------------------------------GFPSSTVSFRLYEAQDILVMYSGMPGHVPPIYRLSKSLEGCVAVAVKSCFGYEDKYIHYLQNAIGVPVLSVGPLMPNVQPVAGSGEG---SDLLKWLDTQRPASVVFVSFGSETFLSREQAGVIAFGLEMSGVSFLWSLRTPQYLD---DPPELLPEGFETRTRDRGLVARCWVPQMRILSHGSIGGYLSHGGWSSAMEAXXXXXXXXXXXXXXXXXXNARQITMELQAGIEIERGDDGSFSKESICRAVKMIMEGEEGKNMKSKAVEAQDIVVGSTGRQQSYIYDFIQHLAGVQDTEK
B8LKI0_______________ALDGIEKPFRSLLRQLSPDYLVHDFVQYWTQSAAAEMQVPAIYFSIFPPASFAYALHPSKLRNQDITAEELAAPPFGFPSSVIRFRLHEARDLLVMYRGIPGHIAPISRFAKCLEGCMAVILKSCFEYEEKYMSYFEDALGVPVLSVGPLTPAVLPGA-SGNGSDHSDLLEWLDRQREASVVFVSFGSEAFLSEDQIHELALGLEASGLPFLWSIRFPRYSDGGHDPLGVFPEGFQIRTQDRGLVVEGWVPQVQILSHRSIGGFLSHGGWSSAMESLSFGIPLIVLPIQLDQGLNARQIAAELKAGIEIERGEDGSFLRENICTTLTMAMAGEEGEKLRSKAAEARDIIAAN---KQSHIHDFIQKLEQLAEDHK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
489	25	75			0.996479
491		75	25		0.996478
492		75	25		0.996478
493	75		25		0.996478
506	25		75		0.996486
548		50		50	1.0
629		75		25	0.996473
762	88	11			0.923564
763			88	11	0.923564
764	88		11		0.923564
767	11		88		0.923564
768	85	14			0.993533
769	85			14	0.993533
770	85	14			0.993533
771	12		87		0.99256
899	75			25	0.996473
962			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain