SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28970

Length: 417 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28970

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF	-	-	6.0e-30	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%
Blast2go	retrotransposon gag protein	-	-	1.13055e-34	72%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carlavirus nucleic acid-binding protein	IPR002568	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Transcription factor DP, C-terminal	IPR014889	-	-
Sma3	Transcription factor DP	IPR015648	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
134		20		80	0.995493
136	25		75		0.996473
151	20		80		0.995493
154	80		20		0.995493
160	40		60		1.0
169		12		87	0.992554
179		12		87	0.992554
185		12		87	0.992554
195		87		12	0.992554
198	25		75		1.0
200	87			12	0.992554
204	12		87		0.992554
213		12	87		0.992554
225		12		87	0.992554
259	12			87	0.992554
260	12		87		0.992554
261		25		75	1.0
262			12	87	0.992554
265		12		87	0.992554
266	12	87			0.992554
268	12		87		0.992554
273		12	87		0.992554
275	87			12	0.992554
276			85	14	0.993533
285		66		33	0.997452
292			66	33	0.997452
294		25		75	0.996473
323	75		25		0.996473
324	25	75			0.996473
325	75		25		0.996473
328	25		75		0.996473
329	75	25			0.996473
330	25		75		0.996473
332	75	25			0.996473
333		25	75		0.996473
334	25			75	0.996473
336		75	25		0.996473
337		75	25		0.996473
338	75			25	0.996473
341		25	75		0.996473
345	75		25		0.996473
362	33		66		0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain