SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28952

Length: 878 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28952 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATNAP8, putative n=1 Tax=Ricinus communis RepID=B9R9H4_RICCO	-	-	64%
FL-Next	Isoform 2 of ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28	-	-	59%
Blast2go	abc transporter b family member 28	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	74%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q8LPQ6-2

Fln msg: Distance to subject end: 212 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 243 - 457

Fln protein: MVLDNRAVYKRTTVPIFKAHGQAQAQISDCAAETFSAIRTVRSFGGEVRQMFTFSEQVHSYQKSGIKLGWMKSVNESLTRIMVYVSLMALYSVGGSKVKMGELSVGTMASFIGYTFMLTFAVQGVVNTLGDIRGMLAAVDRINSVISSTEIDEPLAFGLERQAHGEHVSSKEYENAETADNVSDMNFKIRHFMSGLKSTSSVRELAWAGDVALEDVYFAYPLRPDAQILNGFTLNLNRGTVTA

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTTGTGGATTTTTCCAAACCAAGAAAATATCAGGGTAAAATCATGAAAGCCCATTACAGGACGTTTTAACATAACAAGGAGTGTTATGACTGATGAGATAACCTAAAGTACCAATAAATT_-_ATGGTGCTAGACAATAGAGCTGTATATAAACGCACCACAGTACCTATCTTCAAAGCACACGGGCAGGCTCAAGCACAGATTTCTGATTGTGCAGCTGAAACTTTCTCGGCAATTCGTACAGTGAGATCCTTTGGTGGAGAAGTGAGGCAAATGTTCACGTTTTCTGAGCAGGTTCATTCTTATCAGAAAAGTGGAATTAAACTGGGATGGATGAAATCTGTTAATGAATCATTGACCAGAATCATGGTTTACGTCTCATTGATGGCTCTGTACAGTGTTGGTGGAAGCAAAGTAAAAATGGGTGAACTGTCAGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCATGTTGACATTTGCAGTCCAAGGGGTTGTAAACACACTGGGTGATATTCGCGGGATGCTTGCTGCAGTTGATCGGATCAATTCTGTCATATCTTCGACAGAAATTGATGAGCCATTGGCTTTTGGATTAGAAAGACAGGCTCATGGTGAACATGTAAGTTCCAAGGAGTATGAAAATGCAGAAACTGCTGACAATGTTTCTGACATGAATTTCAAGATTAGACATTTCATGTCAGGGCTGAAGTCGACTTCTAGTGTTCGTGAGCTAGCTTGGGCTGGAGATGTTGCTCTTGAAGATGTATACTTTGCTTACCCACTAAGGCCTGATGCCCAAATCTTGAATGGGTTCACTCTTAACTTGAACCGTGGAACAGTAACAGCTC

Fln Alignment:

AllPineV4_c7382___AVYKRTTVPIFKAHGQAQAQISDCAAETFSAIRTVRSFGGEVRQMFTFSEQVHSYQKSGIKLGWMKSVNESLTRIMVYVSLMALYSVGGSKVKMGELSVGTMASFIGYTFMLTFAVQGVVNTLGDIRGMLAAVDRINSVISSTEIDEPLAFGLERQAHGEHVSSKEYENAETADNVSDMNFKIRHFMSGLKSTSSVRELAWAGDVALEDVYFAYPLRPDAQILNGFTLNLNRGTVTA
Q8LPQ6-2_____________AVYKRSTVPVYKSHGLAQATMSDCVSETFSAIRTVRSFSGEKRQMSIFGSQILAYKLSGLKLGTFKSINESITRVAVYISLLALYCLGGSKVKTGELAVGTVVSFIGYTFTLTFAVQGLVNTFGDLRGTFAAIDRINSILNAVDIDEALAYGLERDIHTKKVQDENLKLFLSAGPNVNIRHLDKYYMSNLKSTNNLRTLTWAGDVCLDDVHFAYPLRPDVKVLDGLSLTLNSGTVTA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
282			10	90	0.90298
317	90		10		0.90298
345		87		12	0.992554
349		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain