SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28911

Length: 1664 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28911 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein ALWAYS EARLY 3 [Arabidopsis thaliana] sp\|Q6A332.1\|ALY3_ARATH RecName: Full=Protein ALWAYS EARLY 3; Short=AtALY3 emb\|CAE47462.1\| always early protein 3 [Arabidopsis thaliana] gb\|AEE76508.1\| protein ALWAYS EARLY 3 [Arabidopsis thaliana]	-	-	36%
FL-Next	sp=Protein ALWAYS EARLY 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	protein always early 3-like	-	-	55%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DIRP	IPR010561	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q6A332

Fln msg: Distance to subject end: 600 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 553 - 1132

Fln protein: MASSRKPRISSKRTGKATEGAAEKDDDGTYKNRQRKRKLSDMLGPQWSEEDLQNFYEAYRKYGKDWKKVSAMIRNRTMEMVEALYSINKAFLSLPDGTACAVGLIAMMTDHYNMLEGSNSDRDSSDGFGASGRPQKQTRMKQKYTSTNNFDRSYSDLLQCKSGPSNYGCPSPVKKRRSGGSRPRVVGKRTPRFPVSYTLEKQNSEAVLSGKQVPVLDGDHDDYDVAKAVALTLAEASQRAASPQVSRTPSRITLQMRSSPVQNGDFKGSYARNESGGSAIKLTGSTMDEGSLEGSQESREVGNGGNSKTDEQMIPGETRMKATHNLKSRGRRPPIKKFKSHGLEQECFDDVKEECSCTEEGVGVKDEKDEIMDTEVDYGRKRKKQLPQRSRKRSRQLFSGEENFGLDALATLADLSLNGLLPSPTVDSESSVQVKEEKDNGMIEKGDRNARQVRVVGSHEEKPRVSSNRERGPLYKASANSVEVVTKEKHHEDAKKVVLDGGHVSPVVDIKKRRRKPTAPKVQQLEALGETCSGEVQKLEALVGDGGKFRNKH

Protein Length: 554

Fln nts: CGAA_-_ATGGCCTCTTCAAGGAAACCGAGAATTTCTAGCAAGCGCACTGGTAAAGCCACAGAGGGAGCTGCGGAGAAAGATGACGACGGTACATATAAAAACAGGCAACGGAAGCGCAAATTGTCTGATATGCTGGGTCCACAGTGGAGCGAGGAGGACTTACAGAATTTCTATGAAGCTTATCGGAAGTATGGAAAAGACTGGAAGAAGGTGTCTGCCATGATCCGTAACAGGACAATGGAGATGGTGGAGGCTCTTTACAGTATTAATAAGGCTTTCTTGTCTCTTCCTGATGGAACTGCTTGTGCAGTTGGACTGATAGCAATGATGACTGACCACTACAATATGTTGGAAGGAAGCAACAGTGACAGGGACAGCAGTGATGGGTTTGGAGCATCAGGACGCCCTCAAAAGCAAACTCGTATGAAACAGAAATACACTAGTACAAATAACTTTGACAGATCCTATTCTGATCTGTTGCAATGTAAATCAGGACCTTCAAATTATGGTTGTCCATCTCCAGTAAAGAAAAGGAGGTCTGGAGGTAGTAGGCCCCGTGTTGTTGGAAAAAGAACACCACGCTTTCCTGTTTCATACACACTTGAAAAGCAGAATTCTGAAGCAGTGCTGTCTGGTAAACAAGTGCCTGTCCTTGATGGTGATCATGATGATTATGATGTTGCTAAGGCAGTTGCATTGACATTAGCAGAGGCTTCACAGAGAGCAGCCTCTCCTCAGGTTTCTCGAACACCTAGTCGGATAACATTACAGATGAGATCATCTCCTGTCCAAAACGGTGATTTTAAGGGTTCATATGCTCGGAATGAGTCTGGAGGATCTGCAATCAAGCTTACTGGGTCTACAATGGATGAAGGCAGCCTAGAAGGTAGTCAAGAAAGCAGGGAAGTAGGAAATGGAGGTAATTCAAAGACAGATGAGCAGATGATACCAGGAGAAACTAGGATGAAAGCTACACATAATCTCAAGAGTAGAGGAAGGAGGCCACCGATAAAGAAGTTCAAGTCACATGGGTTGGAGCAAGAGTGTTTTGATGACGTAAAAGAAGAGTGCAGCTGCACTGAAGAGGGTGTTGGAGTGAAAGATGAAAAAGATGAAATAATGGACACTGAAGTAGATTATGGCAGGAAAAGGAAGAAGCAACTCCCACAGAGGTCAAGAAAGAGAAGCAGGCAGTTGTTTTCTGGAGAAGAAAATTTTGGTCTAGACGCCTTGGCAACTTTGGCAGATTTATCTCTAAATGGACTATTGCCATCTCCTACTGTTGATTCTGAGTCTTCAGTGCAGGTGAAGGAAGAGAAGGACAATGGCATGATAGAAAAGGGTGATAGAAATGCACGGCAGGTCAGAGTAGTTGGCAGTCATGAAGAAAAACCTAGAGTTTCATCAAACCGAGAAAGAGGACCCCTGTACAAGGCTTCTGCCAATAGTGTGGAAGTGGTGACAAAGGAAAAGCATCATGAAGATGCAAAAAAGGTTGTCTTGGATGGGGGGCATGTCAGCCCTGTTGTTGACATAAAGAAGAGGAGAAGAAAACCGACTGCACCAAAAGTGCAGCAGCTAGAAGCATTAGGCGAAACTTGTTCAGGAGAGGTACAAAAGTTGGAGGCTTTGGTTGGAGATGGAGGAAAGTTTCGAAATAAACATT

Fln Alignment:

AllPineV4_c7159___MASSRKPRISSKRTGKATEGAAEKDDDGTYKNRQRKRKLSDMLGPQWSEEDLQNFYEAYRKYGKDWKKVSAMIRNRTMEMVEALYSINKAFLSLPDGTACAVGLIAMMTDHYNMLE-GSNSDRDSSDGFGASGRPQKQTRMKQKYTSTNNFDRSYSDLLQCKSGPSNYGCPSPXXXXXXXXXXXXXXXXRTPRFPVSYTLEKQNSEAVLSG-KQVPVLDGDHDDYDVAKAVALTLAEASQRAASPQVSRTPSRITLQMRSSPVQNGDFKGSYARNESGGSAIKLTGSTMDEGSLEGSQESREVGNGGNSKTDEQMIPGETRMKATHNLKSR---GRRPPIKKFKSHGLEQECFDDVKEECSCTEE--GVGVKDEKDEIMDTEVDYGRKRKKQLPQRSRKRSRQLFSGEENFGXXXXXXXXXXXLNGLLPSPTVDSESSVQVKEEK
Q6A332_______________MAPSRSKKSKYKKKPRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYRKFGKEWKKVAGFVHSRSAEMVEALYTMNKAYLSLPEGTASVVGLTAMMTDHYSVLHGGSDSEQENNEGIETPRSAPKRSRVKSSDHPSIGLE-GLSDRLQFRSSSGF----MPSLKKRRTETMPRAVGKRTPRIPISYTLEKDTRERYLSPVKRGLNQKGDDTDDDMEHEIALALAEASQRGGSTKNSHTPN------RKAKMYPPDKKGERMRADIDLAIAKLHATDMEDVRCEPSLGSTEADNADYSGGRNDLTHGEGSSAVEKQQKGRTYYRRRVGIKE-----------EDAKEACSGTDEAPSLGAPDEKFE----QEREGKALKFTYKVSRRKSKKSLFTADEDTACDALHTLADLSL--MMPETATDTESSVQAEEKK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1405		16		83	0.994512
1407	83		16		0.994512
1412	83		16		0.994512
1417	16			83	0.994512
1419		16		83	0.994512
1420	83	16			0.994512
1426		83		16	0.994512
1428	16			83	0.994512
1430		83	16		0.994512
1433		83	16		0.994512
1460	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain