SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28865

Length: 469 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene28865
GGCCCAGACAGTGTATTTCGATGCGTCTATATTGCTCCTATAGAAGCTCTTGCCAAAGAGAGATATCGGGATTGGGAGCAGAAATTTGGAAAAGGATTGGATCTGAAAGTAGTTGAACTGACAGGTGAATCTGCAACTGATTTGAAGCTCCTTGAAAAGGGTCAAATAATAATAAGCACACCAGAGAAATGGGATGCTTTGTCTCGGAGATGGAAGCAGCGGAAACTGGTTCAACAAGTCAGCCTTTTCATTGTGGATGAACTTCATTTAATTGGTGGAGAGGGTGGTCCAATCCTGGAGGTAATCGTATCCAGAATGAGATATATTTCAAGCCAAATTGAAAATCGTATCCGCATTATTGCTCTTTCTACTTCACTTGCAAATGCTAAAGATCTTGGAGAGTGGATTGGTGCTACTGCACATGGGCTTTTCAATTTTCCACCTGGTGTGCGTCCTGTACCAATTGAGA

Ace file of the UniGene sp_v2.0_unigene28865

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO	-	-	87%
FL-Next	tr=U520, putative; Ricinus communis (Castor bean).	-	-	87%
Blast2go	u5 small nuclear ribonucleoprotein helicase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	92%
Blast2go	Thiamine metabolism	00730	92%
Blast2go	Metabolic pathways	01100	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RY79

Fln msg: Distance to subject end: 620 aas, your sequence is shorter than subject: 156 - 1809

Fln protein: GPDSVFRCVYIAPIEALAKERYRDWEQKFGKGLDLKVVELTGESATDLKLLEKGQIIISTPEKWDALSRRWKQRKLVQQVSLFIVDELHLIGGEGGPILEVIVSRMRYISSQIENRIRIIALSTSLANAKDLGEWIGATAHGLFNFPPGVRPVPIE

Protein Length: 157

Fln nts: GGCCCAGACAGTGTATTTCGATGCGTCTATATTGCTCCTATAGAAGCTCTTGCCAAAGAGAGATATCGGGATTGGGAGCAGAAATTTGGAAAAGGATTGGATCTGAAAGTAGTTGAACTGACAGGTGAATCTGCAACTGATTTGAAGCTCCTTGAAAAGGGTCAAATAATAATAAGCACACCAGAGAAATGGGATGCTTTGTCTCGGAGATGGAAGCAGCGGAAACTGGTTCAACAAGTCAGCCTTTTCATTGTGGATGAACTTCATTTAATTGGTGGAGAGGGTGGTCCAATCCTGGAGGTAATCGTATCCAGAATGAGATATATTTCAAGCCAAATTGAAAATCGTATCCGCATTATTGCTCTTTCTACTTCACTTGCAAATGCTAAAGATCTTGGAGAGTGGATTGGTGCTACTGCACATGGGCTTTTCAATTTTCCACCTGGTGTGCGTCCTGTACCAATTGAGA

Fln Alignment:

AllPineV4_c6909___GPDSVFRCVYIAPIEALAKERYRDWEQKFGKGLDLKVVELTGESATDLKLLEKGQIIISTPEKWDALSRRWKQRKLVQQVSLFIVDELHLIGGEGGPILEVIVSRMRYISSQIENRIRIIALSTSLANAKDLGEWIGATAHGLFNFPPGVRPVPIE
B9RY79_______________GPDSVTRAVYIAPLEAIAKERYRDWERKFGRGLGMRVVELTGETATDLKLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPILEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
166	85		14		0.993533
284		33	66		1.0
361		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain