SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28858

Length: 1772 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28858 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	u1 small nuclear ribonucleoprotein 70 kda-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAD4

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 149 - 221

Fln protein: MHTRDMKTAYKQADGRKIDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKYSGREPQLLSAGPQRIEEPKIREERHDDRERDGERERDRDRDRKERDREPERLHERSHERSRGRDRDRDYDHDRDRDMVREHDRYHKDRDR

Protein Length: 150

Fln nts: ATGGGGATTTTTGAACGCTCCGTTCCTCCGCCCACTCAATCGTTCAAACCGTCGTGACCTTGGCTGTCACTCAATTTTCTTATCAATTTGATCGGATAAGTAGTTGGCAGTGGCTTTCTTTTCTGCTAAATCCATTCCGATTTTCGACCTGTAGCTCCATTTTCTTGCCCAAAAAACCATTTACTGCGATTCTGGACAAAAGGAGAGCCATTTTGGACAAACAAAAAAGGTCGAAGGGTCTTTTTCATCTAGTTTTTCCTTGCAGCAATGGGGGACTACAGTGATGCCTTCATGCGCAACAAAGATGCGGCGGTTCAAGCGCGAACGAAGGCCCAAAATCGAGCCACAGTTCTGCAGTTAAAACTGATAGGGCAGAGTCACCCTACAGGTCTTACTAGCAATCTATTGAAGCTTTTTGAGCCACGACCTCCGCTTGAATATAAGCCGCCACCAGAGAAGAGAAAGTTGCCACCATACACTGGGATGGCGCAATTTGTCCAAAATTTTGCAGAGCCAGGAGATACTGAATATGCTCCTCCTGTTCCACATGTTGAAACTCCGACTCAAAGGAGGGCCAGAATACATAGACTTCGATTGGAGAAAGGTGCTGAAAATGCAGCAAAGGAGCTTGAGAAATATGACCCTAGCAAAGATCCAAATGTGTCAGGAGACCCCTACAAGACAATGTTCGTTGCAAGACTGAGCTATGAGACAACGGAGCATAAAATCGAGCGAGAATTTGAGGTCTATGGACCTATCAAGCGGGTAGGTATTTTAGAGCAATATCACCAAAGGGGCTAGACTTGTTGCTCTTGGGTAAGAATTATTGCTGGATCATGTTCACCTGTCAGGTTTTGCACTATACATGATGCTTCTGTTGTATTGTATTGCTCTCGTACTGTGTTTCGTCACTTATTCCTAGATCGTGTGCCTCATGCTTAGATGCTTAGAATTGGAGCATATGAAAGTTTGTATTTATTGGCGACTTGGGTACGTTGCATTTAAGGTTTTCTTCCTTACGGGATATTTTCATTTAAAATAAATGTTGATCAAAATTGACTTTCCTCATTAGTCAATGTATTATTCTATAATTCCATTTAAAGCAATTAGTTTATATAAGTATGTCATCCTTGGTAAGGGGGAAGGTTCCATATATCTTTTGGTAAGTCGGCCACCTGCATGCTTTTATTCTGCCAACACAATTTGCCATGATGGTGGTGCATTCCCAGTTGAACTTGCGTGGCGAAGCTGTACACCTCAAAGGTTCGCCTGGTCAATGACAATGTCACGAACAAGCCAAGAGGTTATGCATTTGTTGAGTAT_-_ATGCACACACGTGATATGAAAACTGCCTACAAGCAAGCTGATGGCCGCAAAATAGACAATCGGAGAGTGCTTGTGGATGTTGAGCGTGGAAGGACTGTTCCAAATTGGCGGCCTCGAAGACTGGGTGGCGGCTTGGGATCCACTAGGGTTGGTGGTGAAGAAGTCAATCAAAAGTACTCTGGACGAGAACCTCAGCTACTTTCAGCTGGACCACAACGGATAGAGGAGCCAAAGATAAGAGAAGAGCGGCATGATGATCGTGAAAGGGACGGTGAACGTGAACGTGACCGGGATCGTGACAGGAAGGAGAGAGATCGAGAACCTGAACGATTACATGAGAGATCGCATGAGCGTAGCCGTGGTAGGGACCGAGATCGTGACTATGATCATGATCGTGATCGGGATATGGTAAGAGAACATGATAGGTATCATAAAGACCGGGATAGAGA

Fln Alignment:

AllPineV4_c6878___MHTRDMKTAYKQADGRKIDNRRVLVDVERGRTVPNWXXXXXXXXXXXXXXXGEEVNQKYSGREPQLLSAGPQRIEEPKI
D5AAD4_______________MHTRDMKTAYKQADGRKIDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKYSGREPQLLSTGPPRIEEPKI

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
770		14	85		0.993533
860	25		75		0.996473
1081	25		75		0.996476
1082	25			75	0.996476
1682	12		87		0.992554
1721	87			12	0.992554
1723	12			87	0.992554
1736			14	85	0.993533
1737			87	12	0.992554
1738	87			12	0.992554
1739			87	12	0.992554
1747		85	14		0.993533
1749	87			12	0.99256
1750		12	87		0.99256
1751			87	12	0.99256
1753		87	12		0.99256
1754	87		12		0.99256
1758		87	12		0.99256

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain