SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28856

Length: 1414 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28856

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	jasmonate ZIM-domain protein 1 [Solanum lycopersicum]	-	-	8.0e-09	29%
FL-Next	sp=Protein TIFY 10A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	35%
Blast2go	protein tify	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LMA8

Fln msg:

Fln protein: MASEFRRFQNAFEANKTVMNCSTSLKFVPDKQLAKPRFLQGLGRIKPEMMQKVLSSIGHSDDKKADFARVEAQDFNSQFEASNHTEILELFPIKPCSSLGSNPEVTENKVSLPFAIGQIDLDSRSVASKAPEQPSTTQLTIFYNGAMNVYDVSAEKAQGIMNLASANSSRNTTFAISSSKIEQISKPLPSNTPSNPVRENQPQTRPLGLEIARKLSLQCFLRKRKERFNRVAPYTTMKPATLPCKAEKESDDQIILSLASPS*

Protein Length: 264

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCTTCCATTTATTCGGCGCTTTGATTGATGCCCTGGAGTAGCAGACCTTTGATAGAAAGGTATATTAGCTTCTACGCGTTTGAGTTTGCAAGCTAGGTCAACAAGTGCAGC_-_ATGGCTTCAGAATTTCGACGCTTTCAGAACGCCTTCGAAGCAAACAAAACGGTCATGAATTGCAGTACAAGTTTGAAATTCGTCCCTGATAAACAGCTAGCGAAGCCGAGATTCTTGCAAGGCCTGGGGCGGATTAAACCTGAGATGATGCAAAAAGTTCTTTCGTCGATCGGACATTCGGATGACAAGAAGGCTGATTTTGCTCGTGTTGAGGCGCAGGACTTTAATTCACAATTTGAGGCATCGAATCACACAGAAATATTGGAATTGTTTCCAATAAAGCCTTGTTCCTCTCTCGGTTCTAACCCTGAAGTTACAGAAAATAAAGTATCTTTGCCTTTTGCAATCGGCCAAATTGATCTGGATTCGAGATCTGTTGCATCAAAAGCTCCGGAGCAACCATCCACAACTCAACTCACTATTTTTTATAACGGAGCGATGAATGTTTACGATGTCTCGGCTGAGAAGGCTCAAGGCATTATGAATCTTGCCAGCGCCAATAGCTCGAGGAACACAACATTTGCAATTTCCAGCAGTAAAATCGAACAGATATCGAAACCACTGCCTTCCAATACTCCATCGAACCCTGTCCGTGAAAATCAACCTCAAACACGGCCACTAGGCCTGGAAATTGCGAGGAAATTATCTCTGCAATGCTTCCTCCGAAAGCGAAAAGAGAGATTCAACAGAGTGGCCCCTTACACCACGATGAAGCCGGCGACATTGCCTTGCAAAGCAGAGAAGGAATCAGACGACCAGATCATCCTCTCTTTGGCTTCTCCGTCATAA___AATTTTAAATTGCCAGTCAATGCGATTGATTTTAAATGTATCACGTGATGGATCTTTTAATTTCATCACTCCATAATTCTTTTACCTTTAACTGGATATTTTAATGGACGGTCTTACTGAGCGGGGAAACCCGTCCGTATTATATGTTACCCATCTTCACCATGATCGGGGATTTCAAAAAGCACCTACAACTCTAATGTCCATATTGATCATTTTATCACAAAACGACCGTCAAATTCCATTCCGATCGCCACTCAGCTAAACTAATGGCGATCGCAAATTTATTTCTCCAATCAGTGGGCGTCGGTACCTGTACGACAGGAAGCTGCACAGCAATTTCTGGTAGTATTCATGCTACAATTTATTGTACATATTATACCTAATTGACATTGTATACCTATTAAAAGCTGTCGTCATGCAATGACCCGACTGTAATCCGGCCCTACACTATTCATTTAACAAATGGATTATGATATTGATTTTTCCC

Fln Alignment:

AllPineV4_c6854___EASNHTEILELFPIKPCSSLGSNPEVTENKVSLPFAIGQIDLDSRSVASKAPEQPSTTQLTIFYNGAMNVY-DVSAEKAQGIMNLAS---ANSSRNTTFAISSSKIEQISKPLPSNTPSNPVRENQPQTRPLG-LEIARKLSLQCFLRKRKERFNRVAPYTTMKPA
Q9LMA8_______________EASNMDSMVQ--DVKPTNLFPRQPSFSSSSSSLPKE--DVLKMTQTTRSVKPES-QTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSN-IATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
382	80		20		0.995493
438		20	80		0.995493
785		14		85	0.993533
788		14		85	0.993533
789	14	85			0.993533
889	87	12			0.992554
890	87		12		0.992554
894	87			12	0.992554
900			87	12	0.992554
901	87		12		0.992554
902		87	12		0.992554
904	87			12	0.992554
912	12	87			0.992554
999	42	57			1.0
1013			28	71	1.0
1083		12		87	0.992554
1086		87		12	0.992554
1119	85		14		0.993533
1123	85			14	0.993533
1124		85		14	0.993533
1125	85	14			0.993533
1126	85		14		0.993533
1340		11		88	0.991528
1384		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain