SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28836

Length: 403 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene28836
GTTAAGCTGGGACAAGTCTCTCATTCCACCTCAACAGGTGCTGCCTATGGACTACGATGCCAAGCCACTCAAACAATTGGATCGCGAAGTGACCATGGAGGAGATCCAAGAGCATTTTGCAAATTATATGGTTAATGACAACTTGGGGAATATAGCGAATTCACACATGGCATTCGCAGACCAAGAGCCGGAGATGGCGAGGAGTTCTAAATGTCTACGATTAGCGGAGCTCCATTCCACAGCAGTTGATTTCGCCAAGACTGGAGTTCCTGTGCAGGTTCCTCTGGATTTATTTCCGAAGAAGTATCCAGATTTCATGGAGAAAGAGGATAAAGAGAGTTATAAATCATTAACTATTCTTGGTAAGCTTTACAGGTATGTGTTAGAAGCCGATATTGACATT

Ace file of the UniGene sp_v2.0_unigene28836

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY	-	-	3.0e-39	60%
FL-Next	sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	56%
Blast2go	rna-directed rna polymerase	-	-	2.8026e-45	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	2.8026e-45	75%
Blast2go	positive regulation of posttranscriptional gene silencing	GO:0060148	Biological Process	2.8026e-45	75%
Blast2go	response to virus	GO:0009615	Biological Process	2.8026e-45	75%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DXS3

Fln msg: Distance to subject end: 170 aas, your sequence is shorter than subject: 134 - 740

Fln protein: LSWDKSLIPPQQVLPMDYDAKPLKQLDREVTMEEIQEHFANYMVNDNLGNIANSHMAFADQEPEMARSSKCLRLAELHSTAVDFAKTGVPVQVPLDLFPKKYPDFMEKEDKESYKSLTILGKLYRYVLEADIDI

Protein Length: 135

Fln nts: GTTAAGCTGGGACAAGTCTCTCATTCCACCTCAACAGGTGCTGCCTATGGACTACGATGCCAAGCCACTCAAACAATTGGATCGCGAAGTGACCATGGAGGAGATCCAAGAGCATTTTGCAAATTATATGGTTAATGACAACTTGGGGAATATAGCGAATTCACACATGGCATTCGCAGACCAAGAGCCGGAGATGGCGAGGAGTTCTAAATGTCTACGATTAGCGGAGCTCCATTCCACAGCAGTTGATTTCGCCAAGACTGGAGTTCCTGTGCAGGTTCCTCTGGATTTATTTCCGAAGAAGTATCCAGATTTCATGGAGAAAGAGGATAAAGAGAGTTATAAATCATTAACTATTCTTGGTAAGCTTTACAGGTATGTGTTAGAAGCCGATATTGACATT

Fln Alignment:

AllPineV4_c6771___LSWDKSLIPPQQVLPMDYDAKPLKQLDREVTMEEIQEHFANYMVNDNLGNIANSHMAFADQEPEMARSSKCLRLAELHSTAVDFAKTGVPVQVPLDLFPKKYPDFMEKEDKESYKSLTILGKLYRYV
Q0DXS3_______________VSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
136	87		12		0.992554
137	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain