SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28822

Length: 1954 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28822
CGTCGTGACCATGGGGCAATTGACAAGTCTTAATATTATTGAGTTTGGAGGGCATTGTTCCTTCCTTTCCCTCCTCTCTGACCGGCCGGCTGAAGCAAGCGATTAGAACTTGAAGCGGAGGCAGAATGGAGGACGATACTCTGCAAGTTCCAATTCTGGAGAGGAAGGAAGAAGGAAGGAACAGTATTATAATCTTCCAGGAAGACAGTGAGGCAGAGTGGGGTTTGGGGAAGAGACTTTGGGTTGAGTCGAAGAAACTATGGCGAATTGCAGGCCCTGCCATTTTTACGCGTCTCACGACGTACGGGACAAACCTTGTTACACAAGCCTTCGTAGGCCACTTGGGTGATCTGGATCTTGCTGCTATTACTATCTCGACGACTGTCATTATTGGTCTCAGTTTCGGGCTGCTGCTAGGAATGGGAAGCGCCCTGGAGACAATGTGTGGTCAAGCTTTTGGAGCTCGACAGTATGATATGCTTGGCGTTTACCTACAGCGCTCTTGGATTGTGCTATTCATTGTTGCATTATTGCTGCTACCCATGTATATATTTGCCACGCCCATTTTGATTCTACTGGGCCAGACCGCTGAAATATCTGAGCTCTCTGGCACACTTGCAATCTGGATGATACCTCAGCATTTTGGATTTGCATTCTCTCTTCCTCTTCAGAGATATCTACAATCGCAGTTGAAAAACTCAGTGATTGCCGGGTTATCTGGAGCGACCTTATTAATCCATATATTCTTAAGTTGGCTTTTCATTGAGAAGTTGGGAATGGGGGTTATTGGAGCTGCTATTACCTTGGATATAGCGTCATGGCTCCCATTGATTGGCCTGTTTCTCTATATGGTTTGCGGGGGCTGTCCTCTCACATGGAAAGGATTTTCAAGAGAGGCATTCTCGGGTCTCTGGCCCTTTATCAAGCTGTCTATGGCTTCTGGTGTAATGCTATGCTTGGAAATCTGGTATTACAGAGTGTTGATTCTCTTGACAGGACATCTAAATGATGCAGAAACTGCACTGGATTCCCTTTCAATCTGCATGAATATTAATGGAGTCGAGGTGATGATACCGCTCGCCTTTCTCGCTGCCACAGGGGTAAGGGTTGCGAATGAGCTTGGAAGTGGAAATGGAAAAGGAGCAAAGTTTGCAGTGATTGTTTCTGTGACCACCTCCTGTGCTATAGGTCTTGTATTTTGGGTTCTCATCCTGGTCTTCCGTGATGATTTTGCTATCATATTCACAGACAGTACAGTCATCATAGAGGCAGTATCCAAATTGGCATACTTGCTCTCATTCACCATCCTCCTTAACAGCGTGCAGCCAGTACTTTCAGGCGTGGCAATTGGATCGGGATGGCAGTCTATTGTTGCTTATGTGAACATAGGGTGTTACTACGTAATTGGGGTTCCATTTGGAGTGGTGCTTGGCATGGTGTTTAATTTTGGAGTCATGGGGATATGGGCTGGAATGATAAGCGGGACAGCGGTTCAAACACTTGTTTTAGCGATCATCACATATCGTTGTGATTGGGAGAAAGAGGCTGCTAAAGCAATCGACCGTGTCCAAATATGGGCTTCTGTGGGTACTCCAAAATCTGAGTCGACTAACGAATCGGCCAGTCTGAATTGAGATATATGTATCTCAAAATCTCATGCCCTGCATGACCGGTGATAAGAAATATACAATGCAATACTTATTGTATACCTATTTAATTGTGTTCACCTCGGGACACAATTGTCGGATTCCCTGCTGCCTTCAACAAAAGAACGCAACATTTTTCCATTCACTTCAACATTCTGCTGGAACTGGGAGACAAGCTCACAGTCAAAAGCCATTATATAGCGAGGACAGATTCAGTCCTTGCATTCTGATCGATGTATTGTAAAATTAACATTGATAACTGAAGCAGGTTGCTCCAGTTTTATATATGGATATTTGCTTCAGTTTCG

Ace file of the UniGene sp_v2.0_unigene28822 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] gb\|AAK53040.1\|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] dbj\|BAB11560.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN28899.1\| At5g65380/MNA5_11 [Arabidopsis thaliana] gb\|AED980	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein transparent testa 12-like	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVJ0

Fln msg:

Fln protein: MEDDTLQVPILERKEEGRNSIIIFQEDSEAEWGLGKRLWVESKKLWRIAGPAIFTRLTTYGTNLVTQAFVGHLGDLDLAAITISTTVIIGLSFGLLLGMGSALETMCGQAFGARQYDMLGVYLQRSWIVLFIVALLLLPMYIFATPILILLGQTAEISELSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAGLSGATLLIHIFLSWLFIEKLGMGVIGAAITLDIASWLPLIGLFLYMVCGGCPLTWKGFSREAFSGLWPFIKLSMASGVMLCLEIWYYRVLILLTGHLNDAETALDSLSICMNINGVEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILVFRDDFAIIFTDSTVIIEAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVVLGMVFNFGVMGIWAGMISGTAVQTLVLAIITYRCDWEKEAAKAIDRVQIWASVGTPKSESTNESASLN*

Protein Length: 504

Fln nts: CGTCGTGACCATGGGGCAATTGACAAGTCTTAATATTATTGAGTTTGGAGGGCATTGTTCCTTCCTTTCCCTCCTCTCTGACCGGCCGGCTGAAGCAAGCGATTAGAACTTGAAGCGGAGGCAGA_-_ATGGAGGACGATACTCTGCAAGTTCCAATTCTGGAGAGGAAGGAAGAAGGAAGGAACAGTATTATAATCTTCCAGGAAGACAGTGAGGCAGAGTGGGGTTTGGGGAAGAGACTTTGGGTTGAGTCGAAGAAACTATGGCGAATTGCAGGCCCTGCCATTTTTACGCGTCTCACGACGTACGGGACAAACCTTGTTACACAAGCCTTCGTAGGCCACTTGGGTGATCTGGATCTTGCTGCTATTACTATCTCGACGACTGTCATTATTGGTCTCAGTTTCGGGCTGCTGCTAGGAATGGGAAGCGCCCTGGAGACAATGTGTGGTCAAGCTTTTGGAGCTCGACAGTATGATATGCTTGGCGTTTACCTACAGCGCTCTTGGATTGTGCTATTCATTGTTGCATTATTGCTGCTACCCATGTATATATTTGCCACGCCCATTTTGATTCTACTGGGCCAGACCGCTGAAATATCTGAGCTCTCTGGCACACTTGCAATCTGGATGATACCTCAGCATTTTGGATTTGCATTCTCTCTTCCTCTTCAGAGATATCTACAATCGCAGTTGAAAAACTCAGTGATTGCCGGGTTATCTGGAGCGACCTTATTAATCCATATATTCTTAAGTTGGCTTTTCATTGAGAAGTTGGGAATGGGGGTTATTGGAGCTGCTATTACCTTGGATATAGCGTCATGGCTCCCATTGATTGGCCTGTTTCTCTATATGGTTTGCGGGGGCTGTCCTCTCACATGGAAAGGATTTTCAAGAGAGGCATTCTCGGGTCTCTGGCCCTTTATCAAGCTGTCTATGGCTTCTGGTGTAATGCTATGCTTGGAAATCTGGTATTACAGAGTGTTGATTCTCTTGACAGGACATCTAAATGATGCAGAAACTGCACTGGATTCCCTTTCAATCTGCATGAATATTAATGGAGTCGAGGTGATGATACCGCTCGCCTTTCTCGCTGCCACAGGGGTAAGGGTTGCGAATGAGCTTGGAAGTGGAAATGGAAAAGGAGCAAAGTTTGCAGTGATTGTTTCTGTGACCACCTCCTGTGCTATAGGTCTTGTATTTTGGGTTCTCATCCTGGTCTTCCGTGATGATTTTGCTATCATATTCACAGACAGTACAGTCATCATAGAGGCAGTATCCAAATTGGCATACTTGCTCTCATTCACCATCCTCCTTAACAGCGTGCAGCCAGTACTTTCAGGCGTGGCAATTGGATCGGGATGGCAGTCTATTGTTGCTTATGTGAACATAGGGTGTTACTACGTAATTGGGGTTCCATTTGGAGTGGTGCTTGGCATGGTGTTTAATTTTGGAGTCATGGGGATATGGGCTGGAATGATAAGCGGGACAGCGGTTCAAACACTTGTTTTAGCGATCATCACATATCGTTGTGATTGGGAGAAAGAGGCTGCTAAAGCAATCGACCGTGTCCAAATATGGGCTTCTGTGGGTACTCCAAAATCTGAGTCGACTAACGAATCGGCCAGTCTGAATTGA___GATATATGTATCTCAAAATCTCATGCCCTGCATGACCGGTGATAAGAAATATACAATGCAATACTTATTGTATACCTATTTAATTGTGTTCACCTCGGGACACAATTGTCGGATTCCCTGCTGCCTTCAACAAAAGAACGCAACATTTTTCCATTCACTTCAACATTCTGCTGGAACTGGGAGACAAGCTCACAGTCAAAAGCCATTATATAGCGAGGACAGATTCAGTCCTTGCATTCTGATCGATGTATTGTAAAATTAACATTGATAACTGAAGCAGGTTGCTCCAGTTTTATATATGGATATTTGCTTCAGTTTCG

Fln Alignment:

AllPineV4_c6705___MEDDTLQVPILERK-EEGRNSIIIFQEDSEAEWGLGKRLWVESKKLWRIAGPAIFTRLTTYGTNLVTQAFVGHLGDLDLAAITISTTVIIXXXXXXXXXXXXXLETMCGQAFGARQYDMLGVYLQRSWIVLFIVALLLLPMYIFATPILILLGQTAEISELSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAGLSGATLLIHIFLSWLFIEKLGMGVIGAAITLDIASWLPLIGLFLYMVCGGCPLTWKGFSREAFSGLWPFIKLSMASGVMLCLEIWYYRVLILLTGHLNDAETALDSLSICMNINGVEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILVFRDDFAIIFTDSTVIIEAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVVLGMVFNFGVMGIWAGMISGTAVQTLVLAIITYRCDWEKEAAKAIDRVQIWASVGTPKSESTNESASLN
A9NVJ0_______________MEDDSLRVPILERNGEEGRDSVIIFQEESQAEGDLRKRIWVESKKLWRIAGPAIFTRLTTYGTNLVTQAFAGHLGDLELAAITISTTVIVGLSFGLLLGMGSALETMCGQAFGARQYDMLGVYLQRSWIVLFIVAVILLPMYIFATPILILLGQTTEISQLSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAWLSGVTLLIHIFLSWLVIDKLGMGVIGAAITLDIASWLPFIGLFLYMVCGGCPLTWKGFSVEAFSALWPFIKLSIASGVMLCLEIWYYRVLILLTGHLADAETALDSLSICMNINGLEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILILRDDFAIIFTDSAVIIKAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVLLGMVFDFGVMGIWAGMICGTAVQTVVLAIITYRCDWEKEAAKAIDRVKVWAVAGTPKSGSTKAPASLN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1473	66			33	0.997452
1677	25			75	1.0
1797		28		71	1.0
1859		62		37	1.0
1861	37		62		1.0
1933	60		40		1.0
1938	80	20			0.995498
1939	80			20	0.995494
1942	80			20	0.995497
1958	66		33		0.997476
1960			33	66	0.997476
1961	33		66		0.997476
1963	33	33			0.997689
1964		66	33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain