SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28806

Length: 1672 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28806 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	amp dependent	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	0.0	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	74%
Blast2go	Metabolic pathways	01100		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	74%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	74%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	74%
Blast2go	peroxisome	GO:0005777	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: your sequence is shorter than subject: 513 - 540

Fln protein: NVSFMFRNLESYSQRLALADADSGEKLSFREFKDKVSMVGSGLNQLGIRKGDVVLLLSPNSIYVPVCFFGIVSIGAVATTVNPLYTAMEVAKQVRDSKPKLIITVTELWDKVEGLNLPAVVIGGDLCHKRFPNSPIISFSEFLTMGAQKNPPDVIIKQTETAALLFSSGTTGASKGVVLTHRNFIATALMVTSDQERKGERHTVLCVLPMFHVFGLAVITNAQLQRGNTVVSVGRFTMERMLKAIEEYKVTYFPVVPPIVIAIAKEKMVARYDLSSLKEVVSGAAPLGKDIMEECAKVIPHAAILQGYALTESCGIATLGIRKERNMHFGSGGILAPGIEAKVVSLKTGRPLPPNQRGELWFRGPNIMQGYFNNPSATKSTLDEEGWLHTGDLGYFDEDGGLYIVDRIKEIIKVKGYQVAPAELEALLLTHSQIVDAGVIPFPDPNSGEVPIAYVVRSPGSSLIEKDVMDYVAKQVAPYKRLHRINFVNSIPKSSAGKILRRELVAKAKSKL*

Protein Length: 514

Fln nts: AATGTCTCTTTCATGTTCAGAAATTTGGAATCCTATTCTCAGAGATTAGCTCTGGCAGATGCAGATTCCGGGGAGAAACTGAGTTTCAGGGAATTCAAAGACAAGGTAAGCATGGTGGGTAGTGGATTAAACCAGTTGGGTATTAGAAAGGGAGACGTGGTGCTGTTACTTTCTCCTAATTCCATTTATGTACCTGTTTGTTTCTTTGGGATTGTTTCAATTGGGGCTGTGGCAACTACTGTGAATCCATTGTATACTGCCATGGAAGTGGCTAAACAAGTCAGGGATTCAAAACCCAAGCTCATCATTACTGTCACAGAGCTCTGGGATAAAGTTGAGGGTCTGAATTTACCTGCAGTAGTCATTGGGGGGGATCTATGTCACAAGAGGTTCCCCAACTCACCCATTATTTCATTTTCTGAGTTCTTAACCATGGGTGCCCAGAAGAACCCACCTGATGTCATTATCAAGCAGACAGAGACAGCTGCCCTGCTGTTTTCCTCTGGGACTACTGGGGCCAGCAAAGGGGTGGTTTTAACCCATAGGAATTTCATTGCAACTGCTTTAATGGTGACCAGTGACCAGGAAAGGAAGGGTGAGAGGCATACAGTCTTATGTGTCCTTCCCATGTTTCATGTCTTTGGGCTCGCTGTGATAACGAATGCGCAGCTTCAGAGAGGAAATACTGTGGTTTCAGTGGGGAGATTTACTATGGAGAGGATGCTGAAGGCCATAGAAGAGTACAAGGTGACCTATTTCCCTGTGGTGCCACCCATTGTGATTGCCATTGCAAAAGAGAAGATGGTGGCACGATATGATCTGTCTTCTCTGAAGGAAGTTGTCAGTGGAGCAGCGCCCCTTGGAAAGGATATCATGGAGGAGTGCGCCAAAGTAATCCCGCATGCTGCAATACTTCAGGGTTATGCCCTAACTGAATCTTGTGGCATTGCAACATTGGGAATTCGAAAAGAAAGGAACATGCACTTTGGATCAGGTGGAATATTAGCTCCAGGCATTGAAGCAAAAGTTGTAAGTCTAAAAACAGGGAGGCCTCTTCCTCCTAATCAACGAGGAGAGTTGTGGTTTCGTGGGCCTAATATTATGCAGGGATACTTTAACAATCCCAGTGCAACTAAAAGTACACTTGATGAGGAAGGTTGGCTACATACTGGAGATTTGGGTTACTTTGATGAGGATGGAGGCTTATATATTGTGGATCGTATCAAAGAAATAATCAAAGTCAAAGGTTACCAGGTTGCTCCTGCTGAGTTGGAGGCATTGTTGTTGACACATTCCCAAATTGTAGATGCTGGAGTTATTCCCTTTCCTGATCCAAACTCTGGAGAGGTTCCAATAGCATATGTTGTACGCAGCCCTGGAAGCTCTTTGATAGAGAAAGATGTCATGGATTACGTAGCCAAGCAGGTAGCGCCATACAAAAGGTTGCATAGGATAAATTTTGTAAACTCTATACCCAAGTCTTCTGCAGGGAAGATTCTGCGACGAGAGCTTGTTGCAAAGGCAAAATCAAAGTTATAA___CCATAAAAAAACTATAAGATTCAAGGATACTTGTAACATTAATGTAAAGCCTATTTTAAATTATCATAGGCATAAATGCCCCATTCTTATCATTAATGGCCTCTTGGCCTCTCTATTCTTGAAGAGTATTAAC

Fln Alignment:

AllPineV4_c6641___VSFMFRNLESYSQRLALADADSGEKLSFREFKDKVSMVGSGLNQLGIRKGDVVLLLSPNSIYVPVCFFGIVSIGAVATTVNPLYTAMEVAKQVRDSKPKLIITVTELWDKVEGLNLPAVVIGGDLCHKRFPNSPIISFSEFLTMGAQKNPPDVIIKQTETAALLFSSGTTGASKGVVLTHRNFIATALMVTSDQERKGERH-TVLCVLPMFHVFGLAVITNAQLQRGNTVVSVGRFTMERMLKAIEEYKVTYFPVVPPIVIAIAKEKMVARYDLSSLKEVVSGAAPLGKDIMEECAKVIPHAAILQGYALTESCGIATLGIRKERNMHFGSGGILAPGIEAKVVSLKTGRPLPPNQRGELWFRGPNIMQGYFNNPSATKSTLDEEGWLHTGDLGYFDEDGGLYIVDRIKEIIKVKGYQVAPAELEALLLTHSQIVDAGVIPFPDPNSGEVPIAYVVRSPGSSLIEKDVMDYVAKQVAPYKRLHRINFVNSIPKSSAGKILRRELVAKAKSKL
B8LNP4_______________VSFMFRDSSSYADKLALADADSGEKLSFRDFKDKVSMVGSGLSQLGIRKGDVVLLFSPNSIHVPPCFLGIVSIGAVATTVNPLYTAMELAKQVQDSQSKLIITVPELWDKAKDLGLPAIVIGRKGDSKR-ASSPTISFFEVLTMGAQKNPPEVIIEQTDTAALLYSSGTTGTNKGVVLTHRNFIASALMVISDQELEGERHLTHLCLVPMFHVYGLGCIVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEECAKRIPQAAVTQGYGLTESCGIATITFPKERNSHFGSAGTLVPGLEAKIVNLETGRSLPPNQSGEVWLRGPNIMTGYFNNPNATKMTLDKEGWLHTGDMGYFDDEGGLFIVDRIKELIKYKGFQVPPAELEGLLLTHPQIVDAGVIPLPDLNAGEVPIAYVVRTPGSSLTEKDVMAYVAKQVAPFKRLHRINFVDSIPKSSSGKILRRELIAKTKSKL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1364		33	66		0.997452
1497			66	33	0.997457
1520	50	50			1.0
1530		25		75	0.996481
1574		75	25		0.996473
1643	66	33			0.997476
1647	33		66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain