SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28773

Length: 424 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene28773
CGTGGTGGCAATGTAACACATCATGAATACATCCAGGTTGGAAAAGGGCGTGATGTTGGCTTGAATCAGATTTCCATGTTTGAAGCCAAGGTTGCTAGTGGCAATGGTGAACAGGTGTTGAGCAGGGATGTATACAGGCTTGGTCACCGCCTGGATTTTTCCGTATGCTGTCTTTTTATTACTCAACTGTTGGATTCTTTTTAATGCCATGTTGGTGGTTCTAACTGTTTATGTATTCCTCTGGGGCCGGGTTTATATGGCTCTTAGTGGAGTGGAGGAAGCTTTTTAAATGTAGCCGATGTCACAAACAATGTTGCACTTGGGGCAGTTCTCAACCAACAATTCATCATACAGCTTGGTATCTTCACAGCTCTTCCAATGGTCATAGAGAACTCTATAGAGCATGGATTCCTTTCAGCTATCT

Ace file of the UniGene sp_v2.0_unigene28773

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1,3-beta-glucan synthase component-like [Oryza sativa Japonica Group] dbj\|BAC01168.1\| 1,3-beta-glucan synthase component-like [Oryza sativa Japonica Group]	-	-	1.0e-39	61%
FL-Next	sp=Callose synthase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Blast2go	callose synthase 11-like	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	71%
Blast2go	circadian rhythm	GO:0007623	Biological Process	71%
Blast2go	reproduction	GO:0000003	Biological Process	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9U0

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 141 - 1768

Fln protein: RGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFSVCCLFITQLLDSF*CHVGGSNCLCIPLGPGLYGS*WSGGSFLNVADVTNNVALGAVLNQQFIIQLGIFTALPMVIENSIEHGFLSAI

Protein Length: 142

Fln nts: CGTGGTGGCAATGTAACACATCATGAATACATCCAGGTTGGAAAAGGGCGTGATGTTGGCTTGAATCAGATTTCCATGTTTGAAGCCAAGGTTGCTAGTGGCAATGGTGAACAGGTGTTGAGCAGGGATGTATACAGGCTTGGTCACCGCCTGGATTTTTCCGTATGCTGTCTTTTTATTACTCAACTGTTGGATTCTTTTTAATGCCATGTTGGTGGTTCTAACTGTTTATGTATTCCTCTGGGGCCGGGTTTATATGGCTCTTAGTGGAGTGGAGGAAGCTTTTTAAATGTAGCCGATGTCACAAACAATGTTGCACTTGGGGCAGTTCTCAACCAACAATTCATCATACAGCTTGGTATCTTCACAGCTCTTCCAATGGTCATAGAGAACTCTATAGAGCATGGATTCCTTTCAGCTATCT

Fln Alignment:

AllPineV4_c6442___RGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFSVCCLFITQLLDSF*CHVG-GSNCLCIPLGPGLYGS*WSGGSFLNVADV--------TNNVALGAVLNQQFIIQLGIFTALPMVIENSIEHGFLSAI
Q9S9U0_______________RGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQALSRDVYRLGHRLDF-------FRMLSFFYTTVGYYFNTMLIVF--TVYAFLW-GRLYLALSGVEKIAKDRSSSNEALGAILNQQFIIQLGLFTALPMILENSLERGFLPAV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
43	66		33		0.997452
303	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain