SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28690

Length: 1375 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28690 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	1.0e-07	55%
FL-Next	tr=Putative truncated TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	55%
Blast2go	truncated tir-nbs-lrr protein	-	-	1.55226e-07	69%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NZS7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 373 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 53 - 815

Fln protein: LEGRNIPSQIK*AIP*ASVHIVIFYKNYAHS*WCLDELDSMVKSRAPIIPVF*

Protein Length: 54

Fln nts: ATGGGGGACAATCGCCTGGTTCATTATCTGGGCTGGCTTATCTATCTTCTTATCTAGATCTACTTTCCTTGGCTTCATCCTCTTCCGCCTTTCTATTCAACCTCTAATACCAACTACGTTTTGTTGATAAACTGTGGTGGCCCTGATGTCAAGAACATTTTACCCTTCCATCTCTACCGTCTCCTGCGACAACATGGATGGCGAGTTCGCCGGA_-_ATGACTGGAGGGACGCAACATTCCTTCTCAAATAAAATAGGCTATTCCGTGAGCCTCTGTCCATATCGTCATTTTCTATAAGAACTATGCTCATTCATGATGGTGTCTCGACGAACTCGACTCCATGGTGAAGTCGAGGGCTCCCATTATTCCTGTATTTTAACAAGCCAAACCCCATCCAGAACTATGCTCATTCATGATGGTGTCTCGACGAACTCTACTCCATGGTGAAGTCGAGGGCTCCCATTATTCTTGTATTTTAACAAGCCAAACCCCATCCACTATCAAGATTTGTAGATTTGGGAGGTTGGTTTACGCTGGCAGTTGAGAAGAGGAATTGGATCGACTTCAACGAACACTACCAGTGACATTGCAAGTCTTTTCATAGGAAAAAACAGAGATATGGCAATAAGTATACGGGATTTGGTGATTTGGTGGGGTTTATAGATTTAGAGAACAAGTGTACGGCCGAAAAGATACAGAAAATAATATAAATATGTACAGTTACATATTGCGGAAGAAAGATCAATGGGCGGCGATCTTTCGCAGCAGACGACCAACAACATTGAATGGTGATTTCTTGGAGCGATCCTCATGTGTTATAACCGAAGTTTGCGGGATTAAGATGGTCAGTATCTTAAATGTCCAACATTCGGTAGGAATGGGGTGCGTTCTGAAACGTGCCAGTAGGAAATATGGACGAATGAGGTGTTCAGGATCTGTCTGAGGCAGCTTTTCGGTATTTTCCACTTCCATGGTATGAGAAACTTTCGTCTTGTTGCAGCTGAAGATGGCCTTTCAGATGTAAATATTGTCAAAGAAATACATATTGTAGCCAAATATGCAATGGGTTCATGACCCATGGTTATCAGATCAAACTAAGGTTGTCATTATGCCTATGCCAAGTAGCTTTAACTGGTAGAACTCCTGGGAGGTTTTGTTTTATTACAAATTCGGTAATTGCTACAAAATCTCTACATTGTTATATGTGTTAGTATGGATATATTTATTTGAATGATTTGTTTTGAAATTGATATTCGCTTGTAGCATTGTTCTGGAAATGACCAAGGCCCAAATCCTAAAAATTACAGACACAAGTTGTAAAACAATACTTTCGAAGAATTCATAAAATTCTAATCCCTATATACACCATATAAACAA

Fln Alignment:

AllPineV4_c5964___EGRNIPSQIK*AIP*ASVHIVIFYKNYAHS*WCLDELDSMVKSRAPIIPVF*QAKP
E9NZS7_______________KGEDFPCEIKGAIKNASVHIAVFSPTYAASQWCLDELVLMLETRAPIIPVFYHVEP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1014	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain