SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28685

Length: 1119 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28685 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	73%
FL-Next	sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange).	-	-	78%
Blast2go	glutathione peroxidase-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
314	42	57			1.0
327		40		60	1.0
398	50	50			1.0
563		14	85		0.993533
564		14	85		0.993533
565	85	14			0.993533
567	85			14	0.993533
718			72	27	1.0
724		72	27		1.0
726	9	27			1.0
728		72	27		1.0
732	27	72			1.0
733	72		27		1.0
734			27	72	1.0
736		27	72		1.0
741		27	72		1.0
798	83		16		0.994512
826			16	83	0.994512
833		16	83		0.994512
835			83	16	0.994512
836		16	83		0.994512
838	83		16		0.994512
839	16			83	0.994512
842	16			83	0.994512
845	16			83	0.994512
862	20	80			0.995493
889	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain