SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28678

Length: 1979 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28678
CGTCGTGACCTTGGCTGTCACTCAACTTTTCTAAAAATAAATTTTGATTTGAAAAAAAGCAGAGGAAAAAGCATCTGCCTGCGGAAGTTAAATTCTATAATCTCTGAGAAAATAACCCACTCTTATCATCAAGGCGTAAGGCTTCTTTCAATGGCGGCGTCCTCTTCTCTGGTAAACATACGTGGATGGTCATATGGATCATCACCATCCACATTCTTGACCGGCGAGTCGAGGGTGTTCGTTAAGTCTGTGTCAGGCCTCCAGCCTCTGCCATGTCGCCTTCATAGCACGAGGTGCACGTTGGCCAATCCTGTTGATTCTCCTAATGGCAGAGCATTCACCCATGTACTTCAGAGTCGGGGTTTGACTGGGTTGCTTGGTTCTAGTTATCCACAAGAAATGGTTCAAAGAGACTTGGGGCATGATACAAGACTACGGATTTTTTCAGGCTCAGCAAATCCTTCTCTTGCACAGGAAATTGCATGTTACTTGGGCCGGGATCTTGGTAAAATTAGAATTAAAAGGTTTGCTGATGGTGAGATATATGTTCAACTCCAAGAAAGTGTGAGAGGTTGTGACGTGTTCCTGGTGCAACCAACATGCCCACCTGCAAATGAGAATTTGATGGAGCTTCTTATAATGATTGATGCTTGCCGTAGAGCATCTGCCAAAAATATTACAGCTGTTATTCCATACTTTGGATATGCTAGAGCAGACAGAAAGACACATGGACGTGAATCTATTGCAGCAAAACTTGTTGCAAACTTAATAACAGAAGCAGGTGCAAACCGAGTTCTTGCATGTGATCTTCACTCTGGACAGTCCATGGGGTATTTTGATATACCTGTGGATCATGTCTATGGTCAGCCTGTAATTCTAGATTACCTGGCCAGCAAGGTGATTGCATCGAACGATTTGGTGGTTGTATCACCTGATGTTGGTGGTGTTGCCCGTGCTCGTGCTTTTGCTAAAAAACTATCTGATGCTCCTCTGGCTATTGTAGATAAAAGGCGTCAAGGCCACAATGTTTCTGAGGTTATGAATTTGATTGGTGATGTGAAAGGGAAAGTTGCTGTCATGGTTGATGACATGATTGATACTGCTGGGACAATTACAAATGGAGCTGCATTGTTACATGAAGAGGGTGCCAGAGAAGTCTATGCATGCTGCACACATGCTGTTTTTAGTCCTCCTGCAATTGAAAGGCTGTCTGGAGGTCTTTTCCAGGAGGTTATTATTACAAACACAGTACCGGTTAAAGAGGAGAACTACTTTCCTCAATTGACAATTTTGTCTGTTGCAAACCTTCTCGGTGAAACTATTTGGCGTGTCCACGATGACTGTTCTGGTGGCTTTGAACCTCATTCGGGCCTCGGTATTGAGTGAGGTCATTGGGTGGTGGAAATTTACTTGGGATTTTCTTGATCCCTATCTCCACATCGGGAAGGATGCTCCTCAGATGAGCTACTTGCAATTTTTTTCATTGAGAATAGGCTGATTGTTATAACATATGTTCTAGGTTTTGGAGTTGACAGGGCATAAGTGCCCATACATATTGTCTCTTAAAGCTCTGGAGTCTGAGATATCACTACTTCTGGGCTATGTCGATTGAAGAATGTAAATGAAGGTATACATCAGTGGTTCAAAGTTTTCCTCCTGGTGGATTCCTAAAGTTTTCTGAAGTTGACACAAGTATTATAATTTTTACTGACGACTAGAATTGTATTGAGGTGCAGCCTTAGTTCGAATGTCTAAACAAAGAAAGATAATCATTATTAGATTTATATTAGTCTGTTGGTTACCTGTTTTCAATGTTGAACTGAATACTGTGTTTACCAGCTTTCGCAAATATTGGATTGGACAGTTGGGCTGGAAAGTTATCTTTCCTGTCAATTGCTTGGTCTCTGCTTTGTATATTGTTCAATTGTCCTAGAACGAATTAATCTGATCTTGCGAGAGACTGTCTTGGCAGACAGTAG

Ace file of the UniGene sp_v2.0_unigene28678 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribose-phosphate pyrophosphokinase n=1 Tax=Populus trichocarpa RepID=B9IB48_POPTR	-	-	83%
FL-Next	sp=Ribose-phosphate pyrophosphokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	90%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyl pyrophosphate synthetase, conserved site	IPR000842	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Ribose-phosphate diphosphokinase	IPR005946	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTR8

Fln msg: your sequence is longer than subject: 412 - 247

Fln protein: MAASSSLVNIRGWSYGSSPSTFLTGESRVFVKSVSGLQPLPCRLHSTRCTLANPVDSPNGRAFTHVLQSRGLTGLLGSSYPQEMVQRDLGHDTRLRIFSGSANPSLAQEIACYLGRDLGKIRIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTHGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKVIASNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVSEVMNLIGDVKGKVAVMVDDMIDTAGTITNGAALLHEEGAREVYACCTHAVFSPPAIERLSGGLFQEVIITNTVPVKEENYFPQLTILSVANLLGETIWRVHDDCSGGFEPHSGLGIE*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTCTAAAAATAAATTTTGATTTGAAAAAAAGCAGAGGAAAAAGCATCTGCCTGCGGAAGTTAAATTCTATAATCTCTGAGAAAATAACCCACTCTTATCATCAAGGCGTAAGGCTTCTTTCA_-_ATGGCGGCGTCCTCTTCTCTGGTAAACATACGTGGATGGTCATATGGATCATCACCATCCACATTCTTGACCGGCGAGTCGAGGGTGTTCGTTAAGTCTGTGTCAGGCCTCCAGCCTCTGCCATGTCGCCTTCATAGCACGAGGTGCACGTTGGCCAATCCTGTTGATTCTCCTAATGGCAGAGCATTCACCCATGTACTTCAGAGTCGGGGTTTGACTGGGTTGCTTGGTTCTAGTTATCCACAAGAAATGGTTCAAAGAGACTTGGGGCATGATACAAGACTACGGATTTTTTCAGGCTCAGCAAATCCTTCTCTTGCACAGGAAATTGCATGTTACTTGGGCCGGGATCTTGGTAAAATTAGAATTAAAAGGTTTGCTGATGGTGAGATATATGTTCAACTCCAAGAAAGTGTGAGAGGTTGTGACGTGTTCCTGGTGCAACCAACATGCCCACCTGCAAATGAGAATTTGATGGAGCTTCTTATAATGATTGATGCTTGCCGTAGAGCATCTGCCAAAAATATTACAGCTGTTATTCCATACTTTGGATATGCTAGAGCAGACAGAAAGACACATGGACGTGAATCTATTGCAGCAAAACTTGTTGCAAACTTAATAACAGAAGCAGGTGCAAACCGAGTTCTTGCATGTGATCTTCACTCTGGACAGTCCATGGGGTATTTTGATATACCTGTGGATCATGTCTATGGTCAGCCTGTAATTCTAGATTACCTGGCCAGCAAGGTGATTGCATCGAACGATTTGGTGGTTGTATCACCTGATGTTGGTGGTGTTGCCCGTGCTCGTGCTTTTGCTAAAAAACTATCTGATGCTCCTCTGGCTATTGTAGATAAAAGGCGTCAAGGCCACAATGTTTCTGAGGTTATGAATTTGATTGGTGATGTGAAAGGGAAAGTTGCTGTCATGGTTGATGACATGATTGATACTGCTGGGACAATTACAAATGGAGCTGCATTGTTACATGAAGAGGGTGCCAGAGAAGTCTATGCATGCTGCACACATGCTGTTTTTAGTCCTCCTGCAATTGAAAGGCTGTCTGGAGGTCTTTTCCAGGAGGTTATTATTACAAACACAGTACCGGTTAAAGAGGAGAACTACTTTCCTCAATTGACAATTTTGTCTGTTGCAAACCTTCTCGGTGAAACTATTTGGCGTGTCCACGATGACTGTTCTGGTGGCTTTGAACCTCATTCGGGCCTCGGTATTGAGTGA___GGTCATTGGGTGGTGGAAATTTACTTGGGATTTTCTTGATCCCTATCTCCACATCGGGAAGGATGCTCCTCAGATGAGCTACTTGCAATTTTTTTCATTGAGAATAGGCTGATTGTTATAACATATGTTCTAGGTTTTGGAGTTGACAGGGCATAAGTGCCCATACATATTGTCTCTTAAAGCTCTGGAGTCTGAGATATCACTACTTCTGGGCTATGTCGATTGAAGAATGTAAATGAAGGTATACATCAGTGGTTCAAAGTTTTCCTCCTGGTGGATTCCTAAAGTTTTCTGAAGTTGACACAAGTATTATAATTTTTACTGACGACTAGAATTGTATTGAGGTGCAGCCTTAGTTCGAATGTCTAAACAAAGAAAGATAATCATTATTAGATTTATATTAGTCTGTTGGTTACCTGTTTTCAATGTTGAACTGAATACTGTGTTTACCAGCTTTCGCAAATATTGGATTGGACAGTTGGGCTGGAAAGTTATCTTTCCTGTCAATTGCTTGGTCTCTGCTTTGTATATTGTTCAATTGTCCTAGAACGAATTAATCTGATCTTGCGAGAGACTGTCTTGGCAGACAGTAG

Fln Alignment:

AllPineV4_c5891___MELLIMIDACRRASAKNITAVIPYFGYARADRKTHGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKVIASNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVSEVMNLIGDVKGKVAVMVDDMIDTAGTITNGAALLHEEGAREVYACCTHAVFSPPAIERLSGGLFQEVIITNTVPVKEENYFPQLTILSVANLLGETIWRVHDDCS
C0PTR8_______________MELLVMVDACRRASARNITAVIPYFGYARADRKTLGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDHLSSKIISSRDLVVVSPDVGGVARARVFAKKLSDSPLAIVDKRRQGHNTSEVRNLIGDVNGKVAVMVDDMIDTAGTIANGAALLHEKGAREVYACSTHAVFSPPAIERLSGGLFQEVIVTNTIPLKDKNYFPQLTILSVANLLGETIWRVYDDVS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1860			88	11	0.923564
1861		88	11		0.923564
1866			11	88	0.923564
1871	88	11			0.923564
1880		90	10		0.903076
1882		10		90	0.903076
1885			88	11	0.923564
1886	11	77	11		0.968132
1887	11	88			0.923564
1888			22	77	0.999999
1893	12			87	0.992554
1895	87	12			0.992554
1896		12		87	0.992554
1903		16	83		0.994512
1906	42		57		1.0
1908		33		66	1.0
1909		16	33	50	1.0
1911	14			57	1.0
1912		28	14	57	1.0
1913	14		14	57	0.979186
1914			28	71	1.0
1916	16			66	0.988813
1923	80		20		0.995495
1925		20		80	0.995495
1928	80	20			0.995495
1931	80	20			0.995495
1932			20	80	0.995497
1944	75	25			0.996474
1945		25	75		0.996474
1946		25	75		0.996474
1949			75	25	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain