SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28656

Length: 1745 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28656 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exostosin-like protein [Arabidopsis thaliana] gb\|AEE30106.1\| exostosin-like protein [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	exostosin-like protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTU1

Fln msg: your sequence is longer than subject: 467 - 208

Fln protein: MGPVSKNKGGFSSPSLCNKNHLVGALAISVLTFFATRLLDQAVGTCNIQSRSHESRSNTENRQYDGALQDVFGKSSAGWPEQGYGSRLSLKIYVYEEWEVDGLKELIRGRDHSVASVSCAKGQWGTQVKVHQLLQKSGFRTMNKDEAQLFFVPSYVKCVRMMGRLNDKEINQTYVKVLEQLPYFRRSGGRDHIFIFPSGAGAHLFKAWATYLNRSVILTPEGDRTDKRDTSAFNTWKDIIIPGNVDDSILLQNSAKNDLVKPIPLSKRKYLANFFGRAQGKVGRLQLLKLSQQFPDKLEAPELKFSGPEKFGKIEYFQHLRNAKFCLAPRGESSWTLRFYEAFFVECVPVILSDQIELPFQNVLDYSQFSIKWPATRIGVELLEYLDSITDTEIKRMIARGQQVRCLWAYAPENVECSAMTGILWELQRKVRHFHQSAETFWLHNCSVVSRDLVPFNEWRPPMPLP*

Protein Length: 468

Fln nts: GAAAGCACGCTACGAGATTAATTTCGAACAACCTGTGAGAATTCGTCTATGAAATTGGCGTACCTGTATAGAAATATCT_-_ATGGGTCCTGTAAGCAAGAACAAAGGTGGGTTTTCATCCCCATCACTGTGCAACAAAAATCATTTGGTGGGAGCTCTGGCTATTTCTGTATTGACATTTTTTGCCACGAGATTGCTAGATCAAGCGGTGGGTACTTGTAATATCCAGTCCCGGAGCCACGAAAGCAGATCTAATACCGAGAACAGACAATATGATGGTGCATTGCAGGATGTGTTTGGAAAGAGCAGTGCAGGATGGCCAGAACAGGGATATGGATCTCGGCTTTCTCTCAAAATCTATGTCTATGAAGAGTGGGAGGTTGATGGATTGAAGGAATTGATTCGTGGAAGAGACCATTCTGTTGCTTCTGTTTCATGTGCAAAGGGCCAATGGGGGACTCAGGTGAAAGTCCACCAGCTTCTTCAGAAATCAGGTTTTCGGACAATGAATAAGGATGAAGCACAACTCTTTTTTGTTCCATCATATGTGAAATGTGTCCGCATGATGGGCCGTCTCAATGACAAAGAGATCAATCAAACATATGTCAAGGTACTAGAACAGCTGCCATATTTTCGCCGGTCAGGTGGGCGTGATCATATATTTATCTTTCCAAGTGGAGCTGGTGCTCACTTATTTAAAGCATGGGCTACATACTTGAATCGGTCTGTCATTCTGACACCAGAGGGTGATCGCACAGACAAGCGCGACACTAGTGCTTTTAATACCTGGAAAGACATTATTATACCTGGAAATGTTGATGATAGTATATTGTTGCAAAACTCTGCAAAAAATGACTTGGTCAAACCTATTCCCCTATCAAAGAGGAAGTACTTGGCAAACTTCTTCGGCCGGGCACAAGGGAAAGTCGGTCGGCTCCAGCTTCTAAAGCTCTCGCAACAGTTTCCGGACAAGTTGGAAGCTCCAGAGTTAAAGTTCAGTGGTCCCGAGAAATTTGGGAAGATTGAATACTTCCAACATCTACGCAATGCGAAGTTCTGTTTGGCTCCAAGAGGGGAGTCATCTTGGACCCTGCGCTTTTACGAGGCCTTCTTTGTTGAATGCGTGCCTGTTATCTTGTCAGATCAAATAGAGTTACCTTTCCAAAACGTTTTAGACTACAGTCAGTTTTCCATCAAGTGGCCGGCTACACGGATAGGAGTGGAACTTTTGGAATATTTGGATTCCATAACAGATACAGAAATAAAAAGGATGATAGCACGGGGTCAACAAGTCAGATGTTTATGGGCATATGCCCCAGAAAATGTAGAATGCTCGGCTATGACTGGTATTCTGTGGGAGCTGCAACGAAAAGTAAGGCATTTCCATCAGTCGGCAGAAACATTTTGGCTGCATAATTGTTCAGTAGTCAGCAGGGATCTTGTTCCTTTCAATGAGTGGAGACCCCCAATGCCTCTTCCTTAA___TTTATTGTTTTTGTAAGGCATAATATCACAGGTTAACGTTGAAGACGGGTATCTGTTTTGCAAATATGTATCATATAATTACATCTTTATTATTTGTATTTCCATGAAATATTCTCTTTTACATTGGAAATTTTCAAATGTGACATATTCAATGCTTTTTGTTTGGCATCCAATTATCTTCGTGCAGTAGATCTATCTCTTTGTATTGGAACTCAGCTTTATATATCAATAATTATCAATGTCTTGTCACATTCTGACTATAGTT

Fln Alignment:

AllPineV4_c5726___LVKPIPLSKRKYLANFFGRAQGKVGRLQLLKLSQQFPDKLEAPELKFSGPEKFGKIEYFQHLRNAKFCLAPRGESSWTLRFYEAFFVECVPVILSDQIELPFQNVLDYSQFSIKWPATRIGVELLEYLDSITDTEIKRMIARGQQVRCLWAYAPENVECSAMTGILWELQRKVRHFHQSAETFWLHNCSVVSRDLVPFNEWRPPMPLP
A9NTU1_______________MVKPIPLSKRKYLANFLGRVQGKVGRLQLLKLSQQFPDKLEAPELKFSGPEKFGRIEYFQHLRNAKFCLAPRGESSWTLRFYEAFFVECVPVILSDQIELPFQNVLDYSQFSIKWPATRIGVELLEYLDSITDTEIKRMIARGQQVRCLWAYAPESVGCSAMTGILWELQRKVRHFHQSAETFWLHNGSVVSRDLVPFNEWRPPMLLP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1422	85			14	0.993536
1492		87		12	0.992554
1547	87			12	0.992554
1548			12	87	0.992554
1551	12			75	0.975346
1552			12	87	0.992554
1553	87	12			0.992554
1558			12	87	0.992554
1559	87			12	0.992554
1561	12	87			0.992554
1563	87		12		0.992554
1564	12	87			0.992554
1587	14		85		0.993533
1686			75	25	0.996473
1724	75			25	0.996473
1728		75		25	0.996473
1731	75	25			0.996473
1732	25			75	0.996473
1733			25	75	0.996473
1741	25		75		0.996473
1743		25		75	0.996473
1744	25		75		0.996473
1745		25		25	0.995534
1746			25	75	0.996474
1747	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain