SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28618

Length: 2850 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene28618
TCTGTAAATGAAATCAGGGCCGTGAAATGCTTAAATACAAGCGTCGTGACTTGGCGTCTTTAAGAGTCGAGCTCCGTGGAATTTTCAAGTGCAGAGCAATCCAATGGAGTTTTGCAGAAGTTTTACGTTTCTGATCTTACTGTGTTTTTCGGCATTTCTTGCATTTCAATGTAAGGTGGATGCAAGCACAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGCGAAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAGCAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCCAGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACGTGGAGAAATCTTATGGAGAAAAGGGCCAGGCATATATACAATGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGGTGATGTGCAAGCAAAAGACGCTCCAGACCCAATTATCAATACCTGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGATTACGGACGTCGTGACCTTGGCTGTCACTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACACTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACAGCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGCGTGAATACCACTTCATTTGGGAAACGCCTTGAGGCAACAGTTTATTCTATAGGTAGTAGCTTATGTGCTGCCTTTCTCAGCAACACGGACCTTAAGCATGCAGCAACCGTGCAATTCAATGGAAACTCTTATCAGCTACCTGCTTGGTCTGTCAGTATCTTACCTGACTGCAAAAATGTGGTCTTTAACACTGCAAAGGTTAGTGTACAGACTTCCTTAATGGGAATGGAGCAAGTTAGCACTGAGTCTCTTCGTCCTGCTGCAGCATCAAACGCAGATACAGGAAACTTATCTACAAACTGGTCATGGCACAAAGAAGATGTTGGAATCTGGGGAAAAGATCATTTCTCTGGCCAGGGCTTGTTAGAGCAGCTATACACTGTTCTAGATAAAAGTGACTTTCTATGGTATACAATCAGTGTTAATATCGATGAAAATGAACCCTTTCTAAAGAATGGAAGCCAATTAATCTTGCAAGTGGTAACACGAGGACATGCACTCCATGTGTTTGCCAATGGAAATTTTGTAGGAACTCAGAGTGGAAACTATTCGATTAATAATTTTACGTATGAGAAGCCGGTTACATTGAAGGCTGGCGAGAATCAGATAGCTTTGCTCAGTGTCACAGTTGGATTGGCGAATTACGGAGCTTTCTTTGATACATGGACTTCGGGAATAAATGGTCCTGTGAAATTGCTGGGACTTAAAAATGGGCCATTGGATCTGACTGACCAGACCTGGGATTACCAGATTGGTGTGAAGGGGGAACACTTAGAACTATATTCAGACGCTGGAGCCAAGCGAGTTGAATGGATTTCAGGAGCAGATCCTCCCAAACTAGCTGCCCTTATCTGGTACAAGACCGAGTTTAATGCACCAGAAGGCAACGATTCAGTGGCTCTGGACTTCAGCACCCTGGGCAAAGGGCAAGCATGGGTAAATGGGAATCATATTGGGCGCTATTTTCCAACACTGAAGGCTCCCGCCGATGAATGCTCTGAAGTTTGCGATTACAGAGGGCCTTATGAAGCATCCAAATGTGTCACTAACTGCGGACAACCCACACAAACATTGTACCATGTTCCTCGCTCGTGGCTGCAACCAACCAATAACGTGTTAGTTCTGCTCGAGGAAGTCGGTGGTGATCCTACTGGAATTTCACTCCGAAAAAGACAGGTGGACATTGTCTGCGCTCATGTTTCTCAAGATCACCCAACGGTTAACTCATCGACCTCACCAGAGCTACGGCTCCAGTGCTCTTCAGGGCAACACATATCATCCATAAGCTTTGCAAGCTTTGGAAATCCAACTGGGTATTGTGGAAATTTCATCAAAGGCTCGCACGATGCAGGGAGTTCAACTTCCTTGGTAGAAAATGCATGCGTAGGTAATGAGGCATGCTCAATCTCTGTCTCAGAAGATGTATTCGAAAGCCATTTTGATGAGGATGTGATCAAGTCTTTGGCAGTTGAGGCTGTTTGCAAATATTGATCAAACACTCATGCTCTCTCCGAGGCTTGATATTGTTGATAAATGTGTAAAAGGGTACTTAACCTTGTAATCATTGAATAGGGGGAACTGAAAAGTTTTGTTGATTAGGTTTAAATAATTTTATCAATTTATGTATTTAGGTTTCTGTGATTTATAAGGTAAGGTTTATAAAAAATATATATTTTATGTGAT

Ace file of the UniGene sp_v2.0_unigene28618

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	57%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	beta-galactosidase 8	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Overlapping hits, possible frame ERROR between 775 and 769,

Fln protein: MEFCRSFTFLILLCFSAFLAFQCKVDASTSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFAKRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIQFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNVEKSYGEKGQAYIQWAAKMALSLNTGLPWVMxxxxDAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWITDVVTLAVTHRPTEDVAFAVARFYQRGGTLQNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRVNTTSFGKRLEATVYSIGSSLCAAFLSNTDLKHAATVQFNGNSYQLPAWSVSILPDCKNVVFNTAKVSVQTSLMGMEQVSTESLRPAAASNADTGNLSTNWSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNYSINNFTYEKPVTLKAGENQIALLSVTVGLANYGAFFDTWTSGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLELYSDAGAKRVEWISGADPPKLAALIWYKTEFNAPEGNDSVALDFSTLGKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEASKCVTNCGQPTQTLYHVPRSWLQPTNNVLVLLEEVGGDPTGISLRKRQVDIVCAHVSQDHPTVNSSTSPELRLQCSSGQHISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEDVIKSLAVEAVCKY*

Protein Length: 853

Fln nts: TCTGTAAATGAAATCAGGGCCGTGAAATGCTTAAATACAAGCGTCGTGACTTGGCGTCTTTAAGAGTCGAGCTCCGTGGAATTTTCAAGTGCAGAGCAATCCA_-_ATGGAGTTTTGCAGAAGTTTTACGTTTCTGATCTTACTGTGTTTTTCGGCATTTCTTGCATTTCAATGTAAGGTGGATGCAAGCACAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGCGAAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAGCAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCCAGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACGTGGAGAAATCTTATGGAGAAAAGGGCCAGGCATATATACAATGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGGTGATGxxxxxxxxxxxxGACGCTCCAGACCCAATTATCAATACCTGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGATTACGGACGTCGTGACCTTGGCTGTCACTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACACTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACAGCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGCGTGAATACCACTTCATTTGGGAAACGCCTTGAGGCAACAGTTTATTCTATAGGTAGTAGCTTATGTGCTGCCTTTCTCAGCAACACGGACCTTAAGCATGCAGCAACCGTGCAATTCAATGGAAACTCTTATCAGCTACCTGCTTGGTCTGTCAGTATCTTACCTGACTGCAAAAATGTGGTCTTTAACACTGCAAAGGTTAGTGTACAGACTTCCTTAATGGGAATGGAGCAAGTTAGCACTGAGTCTCTTCGTCCTGCTGCAGCATCAAACGCAGATACAGGAAACTTATCTACAAACTGGTCATGGCACAAAGAAGATGTTGGAATCTGGGGAAAAGATCATTTCTCTGGCCAGGGCTTGTTAGAGCAGCTATACACTGTTCTAGATAAAAGTGACTTTCTATGGTATACAATCAGTGTTAATATCGATGAAAATGAACCCTTTCTAAAGAATGGAAGCCAATTAATCTTGCAAGTGGTAACACGAGGACATGCACTCCATGTGTTTGCCAATGGAAATTTTGTAGGAACTCAGAGTGGAAACTATTCGATTAATAATTTTACGTATGAGAAGCCGGTTACATTGAAGGCTGGCGAGAATCAGATAGCTTTGCTCAGTGTCACAGTTGGATTGGCGAATTACGGAGCTTTCTTTGATACATGGACTTCGGGAATAAATGGTCCTGTGAAATTGCTGGGACTTAAAAATGGGCCATTGGATCTGACTGACCAGACCTGGGATTACCAGATTGGTGTGAAGGGGGAACACTTAGAACTATATTCAGACGCTGGAGCCAAGCGAGTTGAATGGATTTCAGGAGCAGATCCTCCCAAACTAGCTGCCCTTATCTGGTACAAGACCGAGTTTAATGCACCAGAAGGCAACGATTCAGTGGCTCTGGACTTCAGCACCCTGGGCAAAGGGCAAGCATGGGTAAATGGGAATCATATTGGGCGCTATTTTCCAACACTGAAGGCTCCCGCCGATGAATGCTCTGAAGTTTGCGATTACAGAGGGCCTTATGAAGCATCCAAATGTGTCACTAACTGCGGACAACCCACACAAACATTGTACCATGTTCCTCGCTCGTGGCTGCAACCAACCAATAACGTGTTAGTTCTGCTCGAGGAAGTCGGTGGTGATCCTACTGGAATTTCACTCCGAAAAAGACAGGTGGACATTGTCTGCGCTCATGTTTCTCAAGATCACCCAACGGTTAACTCATCGACCTCACCAGAGCTACGGCTCCAGTGCTCTTCAGGGCAACACATATCATCCATAAGCTTTGCAAGCTTTGGAAATCCAACTGGGTATTGTGGAAATTTCATCAAAGGCTCGCACGATGCAGGGAGTTCAACTTCCTTGGTAGAAAATGCATGCGTAGGTAATGAGGCATGCTCAATCTCTGTCTCAGAAGATGTATTCGAAAGCCATTTTGATGAGGATGTGATCAAGTCTTTGGCAGTTGAGGCTGTTTGCAAATATTGA___TCAAACACTCATGCTCTCTCCGAGGCTTGATATTGTTGATAAATGTGTAAAAGGGTACTTAACCTTGTAATCATTGAATAGGGGGAACTGAAAAGTTTTGTTGATTAGGTTTAAATAATTTTATCAATTTATGTATTTAGGTTTCTGTGATTTATAAGGTAAGGTTTATAAAAAATATATATTTTATGTGAT

Fln Alignment:

AllPineV4_c5532___MEFCRSFTFLILLCFSAFLAFQCKVDASTSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFAKRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIQFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNVEKSYGEKGQAYIQWAAKMALSLNTGLPWVMCxxKDAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWITDVVTLAVTHRPTEDVAFAVARFYQRGGTLQNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRVNTTSFGKRLEATVYSIGSSLCAAFLSNTDLKHAATVQFNGNSYQLPAWSVSILPDCKNVVFNTAKVSVQTSLMGMEQVSTESLRPAAASNADTGNLSTNWSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNYSINNFTYEKPVTLKAGENQIALLSVTVGLANYGAFFDTWTSGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLELYSDAGAKRVEWISGADPPKLAALIWYKTEFNAPEGNDSVALDFSTLGKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEASKCVTNCGQPTQTLYHVPRSWLQPTNNVLVLLEEVGGDPTGISLRKRQVDIVCAHVSQDH-PTVNSSTS------------PELRLQCSSGQH-ISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEDVIKSLAVEAVC
A9NUR2_______________MDLMRNLRLVLIYAFLFNGFYYWKHVSAANVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAASMAVGLNTGVPWVMCxxADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGG-RLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYSPGSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTDSAN-AASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKSSATSGLEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKFGDPC-KGTVKNLAVEASC

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1527		25		75	1.0
1538		30	70		1.0
1572	70		30		1.0
1608		30		70	1.0
1611		10		90	0.90298
1635	62	37			1.0
1682		66		33	1.0
1706	87		12		0.992554
1707	14			85	0.993533
1710	14			85	0.993533
1711	16		83		0.994514
1713	66		16	16	0.988817
1722	16		83		0.994517
1732			20	80	0.995493
1743	80	20			0.995493
1745	80			20	0.995493
1746	85	14			0.993533
1756		16		83	0.994512
1772		16		83	0.994512
1784	14		85		0.993533
1793	85	14			0.993533
1820		14		85	0.993533
1821	14			85	0.993533
1823			85	14	0.993533
1826	85		14		0.993534
2025	14			85	0.993533
2425	16	83			0.994512
2853	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain