SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28552

Length: 1935 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28552 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI	-	-	86%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	probable pectinesterase pectinesterase inhibitor 51-like	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUI7

Fln msg:

Fln protein: MRGFTMLIRINIVAPILLITILLTLSAQLSSANYLSAGSSRKILRVQKSSTSHSIVLACQASQYPDFCKSSLQANSNISENAGPEEIIGAVMVLSSDLTTQSYLHSKQLLTTSDNRNFTGAVNDCLEFLEGAIRYIAKSRTQELNPRNIKNVKIWMSAALSHQSDCSSALKYVNTTQAVGRSMQELIIVMNFTSNALSMVDALDTYGKDMVIWRPPKTERSLNLSSTADYSQHFNKILGVSEVNELVADVTVSKDESSMSIQQAVNSAPDYSERRFVIRIKAGVYEEIVRIPPNKTNLMFVGDGMDRTVIRGSRSVPSLPGVPTTYDSATVAVNADGFLARDIAFENAAAPGSQQAVALRVDGDLSAFYSCALLGHQDTLYSHTLRQFYRNCRIEGTVDFIFGNSAAVFENCVILVRPRQVKSSQGSSDTVTAHGRIDPGQPTGFVFHNCTINGTEEYMKDYYANPKIYKAYLGRPWKMYSRVIFTNSYLGELISPEGWLPWSGDFALDTLYYGEYQNYGPGATLSGRVPWSNQIPGRNVEMYSIESFIQGDEWLPGTIN*

Protein Length: 562

Fln nts: ATGGGGATATAAACCAATTCATGAGAACCATATAAGGGAGGTGAAAAACAAG_-_ATGAGGGGGTTTACAATGTTAATCAGAATTAATATCGTGGCTCCGATTCTCTTAATCACAATCCTCCTCACGCTTTCTGCCCAACTCTCCTCAGCTAATTATCTCTCAGCTGGCAGTAGCCGTAAAATTCTCCGAGTTCAGAAATCTTCCACCAGCCATAGCATAGTTTTAGCGTGCCAGGCATCACAGTACCCGGACTTCTGCAAGTCATCTCTGCAGGCCAATTCTAATATTAGTGAAAATGCAGGGCCAGAGGAAATCATTGGTGCAGTCATGGTTCTCTCATCGGACCTCACCACACAAAGTTATCTTCATTCTAAACAGCTACTCACTACTTCGGATAACAGGAATTTCACGGGCGCCGTTAACGACTGCTTGGAGTTCCTGGAGGGTGCTATAAGGTATATTGCCAAGAGCAGGACTCAGGAGCTGAACCCGAGGAATATTAAAAACGTCAAGATCTGGATGAGCGCAGCGCTGAGTCATCAGAGTGACTGCAGTTCGGCTCTCAAATATGTTAATACTACCCAGGCAGTGGGAAGATCCATGCAAGAACTCATTATAGTTATGAACTTCACTAGTAATGCTCTAAGCATGGTCGATGCTCTGGATACTTATGGGAAGGATATGGTCATATGGAGGCCTCCCAAAACAGAGAGATCATTGAATTTATCTAGCACTGCAGATTATTCCCAGCATTTCAATAAAATTTTGGGTGTATCAGAGGTAAATGAATTGGTTGCCGACGTTACTGTTTCCAAGGATGAATCCTCCATGAGCATTCAACAAGCGGTGAACAGTGCACCGGATTATTCTGAGCGGAGATTCGTGATACGTATCAAGGCTGGGGTTTATGAGGAGATCGTTAGGATTCCTCCCAATAAGACTAATCTCATGTTTGTGGGCGATGGCATGGATAGGACTGTGATCAGGGGGTCTAGGAGTGTGCCGTCCTTGCCTGGTGTTCCCACTACATATGACTCTGCAACTGTTGCTGTAAATGCGGACGGTTTTTTAGCACGGGACATTGCATTTGAAAATGCAGCAGCGCCAGGCAGTCAACAAGCAGTAGCCCTAAGAGTAGATGGTGATCTCTCTGCCTTCTACAGCTGTGCTCTTCTTGGCCACCAGGATACACTGTATAGTCACACTCTTCGCCAGTTCTACAGAAACTGCAGAATAGAAGGCACTGTTGACTTCATATTTGGTAACTCAGCAGCAGTTTTTGAAAACTGTGTTATTCTGGTGCGTCCTCGTCAAGTAAAATCAAGCCAAGGATCGTCAGATACTGTTACTGCGCATGGCCGAATAGACCCAGGTCAGCCCACAGGATTTGTTTTTCACAACTGCACCATCAATGGAACTGAAGAATACATGAAAGATTACTATGCCAACCCAAAAATTTACAAGGCGTATTTGGGTCGGCCATGGAAGATGTACTCCAGAGTAATTTTCACTAACTCATACTTGGGAGAGCTCATCAGCCCCGAAGGATGGTTGCCTTGGTCAGGGGACTTTGCTCTTGACACACTTTACTATGGAGAATACCAAAATTATGGGCCAGGTGCTACGCTTTCTGGAAGAGTGCCATGGTCTAATCAGATTCCTGGGCGAAATGTAGAAATGTATTCTATTGAAAGCTTCATACAGGGTGATGAGTGGCTACCAGGTACAATCAATTAA___TCCAAAAGCAAAGGCTGATTATTATGTATTTTCTGAAGCATGGCCTTCCTGATATTGCTTCATCTCTGTGGTAGTACTGCAATTCCAACCTGATATTGCTTCAATGAGTTGTTATTGCTAATGAATAATTACATCTTTAAAGGTGTCATCTCTTTGTTATTTCTGATCGAAGCAAAAAGTATAAAGAGAAACCAGTTATC

Fln Alignment:

AllPineV4_c5008___GFTMLIRINIVAPXXXXXXXXXLSAQLSSANYLSAGSSRKILRVQKSSTSHSIVLACQASQYPDFCKSSLQANSNISENAGPEEIIGAVMVLSSDLTTQSYLHSKQLLTTSDNRNFTGAVNDCLEFLEGAIRYIAKSRTQELNPRNIKNVKIWMSAALSHQSDCSSALKYVNTTQAVGRSMQELIIVMNFTSNALSMVDALDTYGKDMVIWRPPKTERSLNLSSTADYSQHFNKILGVSEVNELVADVTVSKDESSMSIQQAVNSAPDYSERRFVIRIKAGVYEEIVRIPPNKTNLMFVGDGMDRTVIRGSRSVPSLPGVPTTYDSATVAVNADGFLARDIAFENAAAPGSQQAVALRVDGDLSAFYSCALLGHQDTLYSHTLRQFYRNCRIEGTVDFIFGNSAAVFENCVILVRPRQVKSSQGSSDTVTAHGRIDPGQPTGFVFHNCTINGTEEYMKDYYANPKIYKAYLGRPWKMYSRVIFTNSYLGELISPEGWLPWSGDFALDTLYYGEYQNYGPGATLSGRVPWSNQIPGRNVEMYSIESFIQGDEWLPGTIN
A9NUI7_______________GFTMLLRINIVATLLLITILLALCAQFSSANYLSAGSGHKKHLVKKSSASHSIDLACQASQYPDLCKSSLQANSNISENAGAEEIIGAAMVLSSDKTTQSYLHSKQLLNTSDNRNLTGAVKDCLEFLEGSIRYIAKSRTQQLNPRNIKDVKIWMSAALSHQYDCSSALKYVNTTQMVGRSMQELVIVMNFTSNALSMVDALDTYGKDMVIWRPPKTERSSKLSSTADYSHHYNKIWDVLEVDDLVSDVTVSKDESSMSIQQAVNSAPDYSERRFVIRIKAGVYEEIVRIPPTKTNLMFVGDGMDRTVITGSMRVPSLPGVPSTYDSATVAVNADGFLARDIAFENAAGPVSQQAVALRVDSDLSAFYNCALLGHQDTLYTHTLRQFYRNCRIEGTVDFIFGNSAAIFENCLILVRPRQVNASKGSSDAVTAHGRTDPAQPTGFVFHNCTINGTEEYMKEYYSNPKIYKAYLGRPWKMYSRVIFMNSYLGELIVPEGWMPWTGDFALDTLYYGEYQNYGPGAKVSGRVPWSNQIPKINAGKYSINSFIQGDEWLPATIN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1304	12		87		0.992554
1326	14	85			0.993533
1327		14		85	0.993533
1330	85			14	0.993533
1384	83	16			0.994512
1385		16	83		0.994512
1387			83	16	0.994512
1565	25			75	0.996477
1566		25	75		0.996477
1568			75	25	0.996477
1580	75		25		0.996478
1600	20		80		0.995493
1795	71	14	14		0.984338
1796		14		85	0.993533
1797	85	14			0.993533
1851			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain