SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28543

Length: 738 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28543 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H3 n=1 Tax=Ostreococcus tauri RepID=Q018N5_OSTTA	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	histone h3	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	98%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	98%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
168		88		11	0.923564
226	23		76		1.0
238	90		10		0.90298
240			10	80	0.959698
242	75	25			1.0
244	77		11	11	0.968132
245		11		88	0.923564
247	12		87		0.992555
248	12		87		0.992554
251			50	50	1.0
252	37	12	50		1.0
254	87	12			0.992554
257	87	12			0.992554
267		42		57	1.0
283	83		16		0.994512
288	25			75	0.996473
289		25		75	0.996473
292		25		75	0.996473
293	75	25			0.996473
296	75		25		0.996473
298	75			25	0.996473
299	75	25			0.996473
303			25	75	0.996473
305		25		75	0.996473
333		80	20		0.995493
334		20		80	0.995493
338	20			80	0.995493
443	12		87		0.992554
502	14			85	0.993533
505	85	14			0.993533
508		85	14		0.993533
509		85	14		0.993533
514	83	16			0.994512
515			16	83	0.994512
516	16	83			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain