SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28503

Length: 1837 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28503

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative serine carboxypeptidase-like 23 n=2 Tax=Arabidopsis thaliana RepID=SCP23_ARATH	-	-	46%
FL-Next	sp=Putative serine carboxypeptidase-like 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	serine carboxypeptidase-like protein	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O82229

Fln msg: Separated hits, possible frame ERROR between 1203 and 1209, your sequence is longer than subject: 498 - 454

Fln protein: MGRIMAAKFLILFVILSAAIAPSHQRATQGDALRSWRRNRRHKSHSLQTAEWEFDSPLSSFKNDSDYLTESEDGHLREADYLPHGLPGQPEGIKFKQYSGYVTVNAHAGRALFYYFAEAVRDPSKQPLVLWLNGGPGCSSLGIGALEELGPFRVNPDGKTLYFNPDGWNQVANLLFLESPAGVGFSYSNTSADYSEYSGDRRTATDAYAFLVKWFNRFPQYKFRDFYIAGESYAGNYIPELAATILHHQRLSQASFINFKGIMVGNGIMNSDTDGIGEYTYPWTHALMSDETYEALINNCTQSDADEKFCSDLEDTMDREMGNINPYNIYAPLCPTDSSQSSKLAQEKVAEIPAYDPCMDDYVDAYLNSPEVQKAIHASVTNWSQCxxxSWNDSAFTMLPTYRRLIAAGLRILLYSGDTDTVVPVTSTRLSINELKLPIETPWYPWLNGDEVGGYTVIYKGLTFATVRGSGHEVPEYQPSRALTLFKSFLAGKPLPS*

Protein Length: 499

Fln nts: TGTAACTTTCTCTGGTTGTTTCCATCGTTGTTTCGGCCAAAG_-_ATGGGGAGAATTATGGCAGCTAAATTCTTGATTTTGTTCGTGATCTTGAGCGCAGCTATTGCGCCCTCTCATCAGCGTGCTACACAAGGTGACGCACTGCGATCGTGGAGAAGAAATAGAAGACACAAGAGCCATAGCCTACAAACTGCAGAGTGGGAGTTTGATAGCCCCCTGTCAAGCTTTAAGAATGATTCCGATTATTTGACAGAGTCAGAAGATGGTCACCTGCGCGAAGCTGATTATCTCCCCCATGGCCTTCCCGGACAGCCGGAGGGCATCAAATTTAAACAGTACTCAGGGTATGTAACAGTGAACGCCCATGCAGGCAGAGCGCTTTTCTATTATTTTGCGGAGGCCGTTCGAGACCCTTCAAAGCAGCCGCTGGTTCTCTGGCTTAATGGCGGGCCTGGATGTTCGTCACTCGGAATTGGAGCACTTGAGGAACTCGGACCTTTCCGCGTAAATCCAGACGGGAAAACGCTCTACTTCAATCCCGACGGATGGAACCAAGTGGCCAATCTATTGTTTCTGGAGTCCCCAGCAGGCGTTGGATTCTCTTACTCGAACACGAGCGCTGATTATTCAGAATATAGTGGTGATAGACGAACAGCTACAGACGCGTATGCATTTTTGGTAAAATGGTTTAACAGATTTCCACAATACAAATTCCGAGATTTCTACATAGCTGGGGAAAGTTATGCAGGAAATTACATTCCAGAGTTGGCTGCAACAATTTTACATCACCAAAGGTTATCACAGGCTTCTTTCATTAATTTCAAAGGGATAATGGTGGGGAATGGCATAATGAATAGTGATACGGATGGTATTGGAGAATACACGTACCCGTGGACACATGCATTGATGTCGGATGAAACTTACGAGGCTTTGATCAACAACTGTACGCAATCAGATGCAGATGAAAAGTTTTGCAGTGATTTGGAAGATACGATGGACAGAGAGATGGGAAATATCAATCCCTACAACATCTATGCTCCGCTATGCCCAACTGACTCATCCCAATCATCCAAATTAGCCCAGGAGAAAGTAGCAGAGATTCCCGCATACGATCCTTGCATGGATGACTACGTAGACGCGTATCTGAACAGCCCGGAAGTTCAGAAGGCCATACATGCAAGCGTCACAAACTGGAGCCAATGCAGxxxxxxATCCTGGAACGATTCTGCCTTTACTATGTTACCGACCTATCGTCGACTAATCGCAGCAGGGTTGCGAATACTTCTCTATAGCGGAGACACAGATACAGTAGTGCCCGTGACCTCCACGAGACTTTCCATCAATGAGCTTAAGCTTCCAATTGAGACTCCATGGTACCCCTGGCTTAACGGTGACGAGGTGGGAGGATATACTGTAATTTACAAGGGCCTAACATTTGCCACCGTTAGGGGGTCGGGGCATGAAGTTCCGGAATATCAACCGTCCAGGGCTTTAACGTTGTTCAAAAGTTTTTTGGCAGGGAAGCCCTTGCCAAGTTAA___TTTCATCGTGTGGAAATTACCGAGGCTGCCTGTATAACCGTCCGTCACTAGTACAATATCTCGATCCGCAGTGATCATAGGCCATTTAGACATTATTGATAGACCATCTATTTTTCATTGATTTCTTAAAAATTTACTACTCTAGGGTTACATTTATTAAGATCAATTTTTTTGCGGGAGAATTTCACTGTTCTTATATGTATCTTCTCTATTAAATCTATTGTATGTTGTCTGAACTTCAAACAAATGGATAAATATGATTAATCAAATAGTCCAGTCAGATGCAACTTTTTATACTTCTC

Fln Alignment:

AllPineV4_c4439___LSSFKNDSDYLTESEDGHLREADYLPHGLPGQPEGIKFKQYSGYVTVNAHAGRALFYYFAEAVRDPSKQPLVLWLNGGPGCSSLGIGALEELGPFRVNPDGKTLYFNPDGWNQVANLLFLESPAGVGFSYSNTSADYSEYSGDRRTATDAYAFLVKWFNRFPQYKFRDFYIAGESYAGNYIPELAATI-LHHQRLSQASFINFKGIMVGNGIMNSDTDGIGEYTYPWTHALMSDETYEALINNCT-QSDADEKFCSDLEDTMDREMGNINPYNIYAPLCPTDSSQSSKLAQEKVAEIPAYDPCMDDYVDAYLNSPEVQKAIHASVTN----WSQCSxxSWNDSAFTMLPTYXXXXXXXXXXXXYSGDTDTVVPVTSTRLSINELKLPIETPWYPWLNGDEVGGYTVIYKGLTFATVRGSGHEVPEYQPSRALTLFKSFLAGKPLP
O82229_______________ISSTSSSSSSLREQEEDMIK-------ALPGQPQ-VGFSQFSGYVTVNESHGRSLFYWLTESPSSSHTKPLLLWLNGGPGCSSIGYGASEEIGPFRINKTGSNLYLNKFTWNTEANILFLESPAGVGFSYTNTSSDLKD-SGDERTAQENLIFLIKWMSRFPQYQYRDFYIVGESYAGHYVPQLAKKIHLYNKAFNNTPIINLKGFMVGNGDMDKHYDRLGAAMYAWSHAMISDKTYKSILKHCSFTADKTSDKCNWALYFAYREFGKVNGYSIYSPSCVHQTNQTKFLHGRLLVEEYEYDPCTESYAEIYYNRPDVQRAMHANLTSIPYKWTLCNxxNWKDSEFSMLPIYKELTAAGLRIWVFSGDTDAVVPVTGTRLALSKLNLPVKTPWYPWYSEKQVGGWTEVYEGLTFATIRGAGHEVPVLQPERALTLLRSFLAGKELP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
255		83		16	0.994512
283		14		85	0.993533
503	11		88		0.999952
1076		22	77		1.0
1205	87		12		0.992554
1206	14		85		0.993533
1208		14	85		0.993533
1209	80			20	0.995495
1211	25	50			0.995534
1216			66	33	0.997452
1569	33	66			1.0
1642	77		22		0.999999
1789		25	75		0.996473
1805	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain