SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28500

Length: 984 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28500

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-dependent protein kinase n=1 Tax=Medicago truncatula RepID=Q5D875_MEDTR	-	-	6.0e-24	75%
FL-Next	sp=Calcium-dependent protein kinase 28; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Blast2go	calcium-dependent protein kinase	-	-	1.1832e-27	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.1832e-27	91%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	1.1832e-27	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.1832e-27	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
271	25			75	0.996473
399	88		11		0.991528
819		87		12	0.992554
837	11			88	0.991528
844	85	14			0.993533
901	16	83			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain