SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28495

Length: 1144 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Babyboom 1 n=1 Tax=Glycine max RepID=E3V057_SOYBN	-	-	76%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	74%
Blast2go	ap2 domain-containing transcription factor	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	80%
Blast2go	stem cell maintenance	GO:0019827	Biological Process	80%
Blast2go	pattern specification process	GO:0007389	Biological Process	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 185 aas, your sequence is shorter than subject: 380 - 606

Fln protein: S*PWLSSGFL*SKHG*RRDLGCHSREQDD*YSQYQLW*RRDLSTITTTTTTNPEQQPKEGMDALTNIQSLKLSMSPTSQSTTSLAIVPAATTQNGTLETSLSDSKKRLIPEKPTTSEPAIRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILASSTLPVGGHVKRIKEAEPSDPSVDGRRNDEDSSTLSSYATSTYSNATNSKTGHEWPLIAFQNHANQQEGGVVTNKK

Protein Length: 381

Fln nts: CGTCGTGACCTTGGCTGTCATCAGGGTTTCTATGATCAAAACATGGCTGACGTCGTGACCTTGGCTGTCACTCAAGAGAGCAAGATGACTAATACAGTCAATACCAATTATGGTAACGTCGTGACTTGTCTACTATCACAACTACTACTACTACAAATCCTGAGCAGCAGCCCAAAGAGGGCATGGATGCACTCACAAATATTCAATCTTTGAAACTCTCCATGAGTCCAACTTCTCAGTCCACCACTTCATTAGCCATTGTTCCAGCTGCCACAACTCAGAATGGTACCCTAGAGACCTCTTTGTCTGATAGCAAGAAACGTCTCATCCCAGAGAAACCCACTACTTCAGAACCCGCTATAAGAAAATCCATAGATACATTTGGACAGCGGACTTCAATATATCGTGGAGTCACCAGGCATAGGTGGACGGGGCGTTATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAAGGCCAGACACGCAAGGGCAGGCAAGTGTATTTAGGTGGATATGACAAAGAAGAGAAGGCAGCGAGAGCATACGATCTTGCAGCTCTGAAATACTGGGGTCCAACCACCACCACCAATTTCCCTATCAGCAATTATGAGAAAGAACTGGAGGAAATGAAACACATGACAAGGCAAGAATACGTTGCATCTCTGAGAAGAAAGAGCAGTGGATTCTCTAGAGGTGCATCAATGTACCGTGGAGTAACAAGACATCATCAGCATGGAAGGTGGCAAGCAAGAATTGGAAGAGTTGCTGGCAACAAAGATCTATATCTAGGAACATTCAGTACCCAAGAAGAGGCAGCCGAAGCTTATGACATCGCTGCCATAAAATTCAGAGGTCTGAATGCTGTGACAAACTTCGATATGAGTAGGTATGATGTTAAAAGCATACTTGCTAGCAGCACATTGCCCGTGGGAGGACATGTTAAGCGCATAAAAGAAGCCGAGCCATCAGATCCAAGTGTGGATGGACGCCGCAATGACGAAGACAGCAGTACATTAAGTTCATATGCAACCAGCACTTACAGCAATGCTACTAATTCCAAAACAGGCCATGAATGGCCATTGATTGCATTTCAAAACCATGCAAACCAGCAGGAGGGGGGTGTGGTGACAAACAAGAAGTG

Fln Alignment:

AllPineV4_c4393___LTNIQSLKLSMSPTSQSTTSLAIVPAATTQNGTLETSLSDSKKRLIPEKPTTSEPAIRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSILASSTLPVGGHVKRIKEAE-PSDPSVD
Q76H96_______________LGDFQSLTLSMSPGSQNSSAIISQPTIIDQCTPVET------KKRGAGKAGTKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTHINFPLETYEKEIEEMKNMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGD

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
126		33	66		0.997476
136	33		33	33	0.997753
229	75		25		0.996479
232	75	25			0.996479
236		75	25		0.996479
238	75	25			0.996479
242		66	33		0.997452
243			33	66	0.997452
245	66			33	0.997452
250	66			33	0.997452
252	33	66			0.997452
289	80	20			0.995498
290	80		20		0.995498
292		20	80		0.995498
298		80		20	0.9955
300	75		25		0.996473
302	75			25	0.996473
304	75			25	0.996473
320	90		10		0.90298
321			90	10	0.90298
324	90			10	0.90298
325		10	90		0.90298
478		14		85	0.993535
480		85		14	0.993535
481	85	14			0.993535
484	85			14	0.993535
487		14	85		0.993535
488	71	14			0.984337
489	83			16	0.994512
490			80	20	0.995493
492		80	20		0.995493
494	62	25		12	1.0
496	57			42	1.0
498	75		25		1.0
499		75		25	1.0
500			85	14	0.993533
501	25	75			1.0
502	12	25			1.0
503	75	25			1.0
504	75			25	1.0
505			75	25	1.0
509	71			28	1.0
511			71	28	1.0
515		33	66		1.0
516		12		87	0.992555
517		28	71		1.0
518	28			71	1.0
519	87	12			0.992555
520			12	87	0.992555
522			12	87	0.992556
525		12	87		0.992555
526			87	12	0.992555
530	85	14			0.993533
532	85		14		0.993533
534		14	85		0.993533
592		25	75		1.0
594		75		25	1.0
597	75		25		1.0
658	83			16	0.994514
660	83		16		0.994514
666	83			16	0.994514
667	80			20	0.995493
672	80			20	0.995493
675	80			20	0.995493
676		20		80	0.995493
723	83		16		0.994516
727	83		16		0.994516
734			80	20	0.995493
737			83	16	0.994514
738			83	16	0.994514
740	60	20		20	0.99255
742		16		83	0.994514
743	75	25			0.996473
747	75			25	0.996473
748		25	75		0.996473
819		20	80		0.995493
822		80		20	0.995493
823	80			20	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
141	154	ACT ACT ACT ACT AC	14
579	591	ACC ACC ACC ACC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain