SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28482

Length: 1286 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28482

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Diphthamide biosynthesis protein 1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT0_PHYPA	-	-	74%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	74%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	Diphthamide synthesis, DPH1/DHP2	IPR002728	-	-
Sma3		IPR014809	-	-
Sma3	Diphthamide synthesis, DHP1	IPR016435	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9SCT0

Fln msg: Distance to subject end: 210 aas, your sequence is shorter than subject: 271 - 463

Fln protein: MENKVRDGTIEDSSSRPSSSNTEMAAASSISQSGAPKAPRRFVRQQIPDSILNDPALKAAMAVLPPNYNLEIPKCIWRIKQSGAKHVALQFPEGLLMYSLTICDILEAFTDVDECFVLGDVTYGACCVDDYSATALGADFLIHYGHSCLVPIDFTSIPCLYVFVDIQIDVQHLVETIRYNFKPEDRLALAGTIQFSTAIHAAKAALADQYPNINVPQVKPLSPGEVLGCTAPSLPRGTLDTAVFVSDGRFHLEAFMIANPKVQVFRYDPYL

Protein Length: 272

Fln nts: AATGTCACCGAGCCAGTTCCAGGTCTCATACAGGTGAGGGACTCTCACAGTATCTTGAAGCTCGGTAGCTTGAGGCAGCTCATGCCGTTGATTTGGAGAAGGAATCTGCTGCCAGCTTGGATCTTTGGGATAGAAGAATGCTGTTTGGAGTGTTATTTGTAACAGAGATTTATGGGTTAAAGTTGCATTATATGGGTGTTGGCCAAGTAAAACAATACATTGGCACTCATCAAGGGCTCTATGCCTGGCTGCTATCTTTATCTGACCAAAAGAGTGAGTTTTGATATTGTCACTCAGATCTTGAACCTGCTGAGTGTTTTAGTGATCCTGGCTGAAGACCCATTGATGCAACCAAGTGCAGGTTCTTTTACAGTGTTCAAACCCTAAGAGCTTCCTTTTTGCAAGTTTCTTCATTTGCAGATTCTGTATTTGATTGAGTGATCCTCTTTTGTGGATCAAACAATTTGGTTGG_-_ATGGAAAATAAGGTTAGAGATGGAACCATAGAAGATTCTTCATCCAGGCCATCTTCTTCCAATACTGAAATGGCAGCAGCAAGTTCAATATCACAATCAGGTGCACCTAAAGCACCACGGAGATTTGTTAGGCAACAGATACCGGACTCAATTTTGAATGATCCTGCACTTAAGGCTGCTATGGCAGTTTTGCCTCCCAACTATAATCTGGAAATACCGAAATGCATTTGGAGGATTAAGCAATCTGGAGCCAAGCATGTAGCACTGCAATTTCCAGAGGGCCTGCTTATGTACTCCCTCACAATTTGTGATATTTTAGAGGCATTTACTGATGTTGATGAATGCTTTGTACTTGGGGATGTTACGTATGGAGCATGCTGTGTTGATGATTACTCAGCTACAGCACTTGGGGCTGATTTTCTCATTCACTATGGTCATAGCTGTTTAGTCCCAATTGATTTTACAAGTATCCCATGCTTATATGTCTTTGTGGATATACAAATTGATGTGCAACATCTAGTTGAGACAATAAGGTATAACTTCAAACCAGAAGATAGACTTGCTTTAGCTGGGACTATCCAGTTTTCAACTGCCATCCATGCAGCCAAAGCTGCTCTGGCAGATCAGTATCCAAACATCAATGTTCCTCAAGTGAAACCACTATCGCCAGGAGAGGTTCTTGGGTGCACAGCGCCATCGCTGCCCCGTGGCACCCTTGATACTGCTGTTTTTGTGTCTGATGGCCGGTTTCATCTTGAAGCTTTTATGATAGCAAATCCTAAAGTTCAGGTTTTCCGATATGACCCTTATTTGA

Fln Alignment:

AllPineV4_c4302___AASSISQSGAPKAPRRFVRQQIPDSILNDPALKAAMAVLPPNYNLEIPKCIWRIKQSGAKHVALQFPEGLLMYSLTICDILEAFTDVDECFVLGDVTYGACCVDDYSATALGADFLIHYGHSCLVPIDFTSIPCLYVFVDIQIDVQHLVETIRYNFKPEDRLALAGTIQFSTAIHAAKAALADQYPNINVPQVKPLSPGEVLGCTAPSLPRGTLDTAVFVSDGRFHLEAFMIANPKVQVFRYDPY
A9SCT0_______________AAKAITKTSG--APRRYVRQQIPDSILNDPALKAAMAVLPANYNLEIPKTVWRVKQAGAKKVALQFPEGLLLYSLTICDILEEFAGVEDCFVLGDVTYGACCVDDYSAAALGAEFLVHYGHSCLVPVDVSQIPCLYVFVDIQIDVAHLVGAVKHNFEVGTKLALAGTIQFSTAIQVAKTQLVRYFPHILIPQSKPLSPGEVLGCTSPSLPEGTIDVVIFVADGRFHLEAFMIANPNVKAYRYDPY

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
504	12		87		0.992554
505	87			12	0.992554
506	87			12	0.992554
507		87	12		0.992554
511	87	12			0.992554
512	12		87		0.992554
514	87			12	0.992554
515		12	87		0.992554
516	87		12		0.992554
517			12	87	0.992554
518		12		87	0.992554
524			12	87	0.992554
530		71		28	1.0
575		85		14	0.993533
576	85			14	0.993533
629		33		66	1.0
765		25		75	0.996473
808	20			80	0.995493
811		80	20		0.995493
827		80		20	0.995493
848	20	20	60		0.992578
997	90			10	0.90298
1122	50	50			1.0
1125		50	50		1.0
1203			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain