SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28477

Length: 1563 nt

Origin of reads: Inia v1 Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28477

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	omega-hydroxypalmitate O-feruloyl transferase [Arabidopsis thaliana] sp\|Q94CD1.1\|HHT1_ARATH RecName: Full=Omega-hydroxypalmitate O-feruloyl transferase; AltName: Full=Omega-hydroxyacid hydroxycinnamoyltransferase; AltName: Full=Protein ALIPHATIC SUBERIN F	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVW5

Fln msg: Overlapping hits, possible frame ERROR between 125 and 113, and overlapping frame ERROR between 823 and 814,

Fln protein: MAMAMTEEDFVSDLQITMEAPFAVYPAEPTPRRSMxxxxxxQTLVSTVATITFFPACAHMGFDEIVQRYVDALGKLLVHYDFVAGRLALNEDEDRLEIDCNGAGVFFAVGTSDLTLEELKDIKFPNPAFRQLILQDYVSQSHLQDLPLFTLQVTRFKCGGFTVGAGLNHCLFDGISSFDFTVNLASIIKGETLEVTPDLDRTILKARVPQRIDHDHLEYTKLCDIPRGVTASSEREGGGALTESEPIKIPPRPKLVLKLFPVSVEMLNxxxxxxMEDGKIKKCTSFEVVTAHLWRARSLALEMQNHEISTVLFPVECRARMEPPLPREYAGNAVVPGYARATVKELRDEPFSTLVHKVQQGLSRIGNDYVRSVIDWLQVHKGIPCAVNSFSVVAWWRLGLEDAEYPWGNPLHLSPVMGLSHCSELVMLLPNPNQQCGGGGGGGFNVAIALQASQFPRFHQLFQLSK*

Protein Length: 468

Fln nts: CAGCA_-_ATGGCGATGGCGATGACAGAGGAGGATTTTGTCAGTGACCTGCAAATAACGATGGAGGCGCCTTTTGCAGTGTATCCAGCAGAGCCCACCCCACGGCGCTCCATGxxxxxxxxxxxxxxxxxxCAGACTTTGGTATCCACTGTTGCAACAATCACCTTCTTCCCTGCTTGTGCTCACATGGGTTTTGATGAGATAGTCCAGAGGTACGTAGACGCCCTGGGAAAGCTGCTGGTTCACTACGATTTCGTGGCCGGGAGGCTTGCGCTGAACGAGGACGAGGATCGGTTGGAGATTGATTGCAATGGCGCCGGGGTGTTCTTTGCTGTTGGGACGAGTGATCTCACTCTGGAAGAGCTGAAGGATATAAAGTTTCCCAACCCAGCGTTCAGGCAACTCATATTGCAGGACTACGTTTCTCAGTCTCACCTCCAAGATCTCCCGCTCTTTACCCTCCAGGTCACTCGTTTCAAATGTGGGGGTTTTACAGTTGGGGCAGGACTCAATCACTGCCTTTTTGATGGAATATCTTCATTCGATTTTACAGTAAATCTGGCTTCCATTATTAAAGGAGAAACTTTGGAGGTAACACCAGACTTGGATCGAACCATTCTGAAAGCCAGGGTTCCTCAGAGAATTGATCACGACCATCTCGAGTACACCAAGCTTTGCGATATTCCTCGCGGAGTGACAGCTTCCAGTGAAAGAGAAGGCGGCGGGGCACTCACAGAGTCAGAACCGATCAAAATACCACCGCGGCCAAAGCTTGTGCTGAAGCTCTTTCCCGTTTCTGTAGAAATGCTGAATCGxxxxxxxxxxxxxxxAATGGAGGATGGCAAGATCAAGAAGTGCACCAGTTTTGAAGTGGTGACCGCGCACCTGTGGAGGGCAAGAAGTCTGGCGTTGGAAATGCAGAATCATGAGATTTCCACGGTGTTGTTTCCGGTGGAATGCAGGGCCAGAATGGAGCCTCCTCTTCCCAGAGAATACGCGGGCAACGCTGTGGTACCAGGGTATGCGAGAGCAACGGTGAAAGAGCTCCGAGACGAGCCGTTCTCGACCCTGGTGCACAAGGTCCAGCAAGGGTTGTCCAGAATAGGCAACGATTATGTCAGGTCTGTGATAGATTGGCTGCAAGTCCACAAGGGGATACCCTGTGCGGTGAACAGTTTTTCTGTGGTTGCATGGTGGAGGTTGGGGTTAGAGGATGCGGAATATCCGTGGGGAAATCCTCTCCATCTGAGCCCTGTGATGGGCCTGAGCCACTGTTCGGAACTGGTCATGCTGCTCCCCAACCCGAACCAGCAGTGTGGTGGAGGTGGAGGTGGCGGTTTCAACGTTGCCATTGCTCTCCAAGCTTCTCAATTCCCGCGCTTCCACCAGCTGTTCCAACTTTCAAAATAA___CATCCCATCCATGCATTTATCCAGCGATTGACATTTGTGTTTACTCTACGTATTAGCTGCATTCTTCTTCTTGGTGTGTTTGATGTCGAGCATTGCTGCAAATCTGACTTTGTACTGCTAATTTTTATTCATATAGTAGAACCATATTTTTATCTGGTT

Fln Alignment:

AllPineV4_c4245___MAMAMTEEDFVSDLQITMEAPFAVYPAEPTPRRSMFxxxxDQTLVSTVATITFFPACAHMGFDEIVQRYVDALGKLLVHYDFVAGRLALNEDEDRLEIDCNGAGVFFAVGTSDLTLEELKDIKFPNPAFRQLILQDYVSQSHLQDLPLFTLQVTRFKCGGFTVGAGLNHCLFDGISSFDFTVNLASIIKGETLEVTPDLDRTILKARVPQRIDHDHLEYTKLCDIPRG-VTASSEREGGGALTESEPIKIPPRPKLVLKLFPVSVEMLNRLxxxAMEDGKIKKCTSFEVVTAHLWRARSLALEMQNHEISTVLFPVECRARMEPPLPREYAGNAVVPGYARATVKELRDEPFSTLVHKVQQGLSRIGNDYVRSVIDWLQVHKGIPCAVNSFSVVAWWRLGLEDAEYPWGNPLHLSPVMGLSHCSELVMLLPNPNQQCXXXXXXXFNVAIALQASQFPRFHQLFQLSK
A9NVW5_______________MAMALTQEDFVGDLEITMEAPFAVYPAEPTPRRSMFxxxxDQTLVSTVATITFFPACKQMSFDEIVQRYVDALGKLLVHYDFVAGRLTLNEEDDRLEIDCNGAGVFFGVGTTDLTLEELKDLKFPNPAFRQLILQDYVSHSHLQDLPLLTLQATRFKCGGFTVGAGLNHCLFDGISSFDFTVNLASIIRGESLKVTPDLDRTILKARVPQRIDYEHLEYTKFCDIPRGIITAFRGRGGDVEPIESEPIKIPPRPKLVLKLFPVSVEMLNRLxxxAMEDGKIMKCTSFEVVTAHLWRARSQALEMQSNETSTVLFPVECRSRLEPPISREYAGNAVVPGYARATVKELRDEPFSVLVQKVQQGLSRLGNDYVRSMIDWLEVHKGIPCAVNSFSVVAWWRLGLEDAEYPWGNPLHLSP--AISHCAELVMLLHNPSQQ--GGGGGGFNVAIALQPHQFPRFHQLFQLPK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1550			13	86	0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain