SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28475

Length: 809 nt

Origin of reads: Inia v1 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28475 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding n=2 Tax=Vitis RepID=C5DB59_VITVI	-	-	3.0e-26	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	calmodulin-like protein 5-like	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	trichome branching	GO:0010091	Biological Process	65%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	C %	G %	T %	Probability
268	11		88	0.923564
306	10	90		0.90298
538	95		4	0.99692
581	5		94	0.997984

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain