SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28440

Length: 1976 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28440
ACCGCTGCTAGATTTTGCACACGATAAATATCTTCTGCCGCTACTCTTGCTGGTAAATCTCCACTTTTTCTTTCCCTCGCTCGATTTCAAAGATTGGGCAATGGCCACAGCATTTTCTCCAATCAGAAAGAATTCGAAAAGATCAAATCTTGCATTAATTTCAGGTCTGCAAATGGTGAACTGAGCAACAACATAAGGTCAGTGATTGTTCATTTAGATCCATAATATTTCTTTGGCGAGTATTTCTTTGCATTTGACTGCCCCTTGTGGTGGAACTTTAGAAGCCTCCATGGCTGCGAGACTGTTGAAGCTGGAGCTCATCTACAGCTGCGTGGGCAAGAAGTTCATGGTCCGCATGCTCTTCTTGACAATTGCCCTCACTGCAGTGTCTGTTCTCTACACCCTACACGACGCTGGGACATGTGCCTATCTGTCTGACTGCTCAGATGATTTCATGGTCGATTTCGCCCATCCCAGTTGGCCGTTGATCTCATTGCAAAGCGTACAAGATCAGGTGCAGCGGGAGATGTCCGGACCTAGGGTCAGGCCATCCGAAGGTCTAGCGATCGAATCTTATCCCCAAATCAAGATCTGGGCCAAGAAGACGTGGAAAGAGAAGGTAGAATTTTATTCAGCGATCTTTCGCGATCTAATCGCGCAGGGGCTCCTGCGCTCCGGCTTCAAAGCTCTCTGCCTCGGTGCCTCCTCGGGTGTCTCCGTAGAGGCAATGCGGGAAAACGGCCTGCGGGACACCACTGCAGTGGACGAAAGGCACTCATTAGGGCTGATGAAGGCGGGCAATCGGCGCCTTCCCTTCTCAGACAATTCCTTCGACTTTGTTTTCTCAGGGTCGTTTGATCGAGCCACAGTGCCAGCGTTGCTTGCCTCCGAGATCGAGCGCACGCTCAAGCCAAACGGCGTCGCAGTGATGCTGGCCTCCCACCGGCGCCCGAACATGGGAAAGCCCTCCAACCTCATGAATTCCCTGAACCCCGTGGTGGCCCTGTTCAAATGCTCTGATGTCATTCATGTGAACACATCCGGGTCGCCTAATTCCCAGAAAACCACAGTGATTGCACTCCGTAAGAGGCCTTCTAAGCCGCTGGGATTGATTAAGGACTATGCGCGCTCTAAGCAGAACAGAAGCTTAACTAAATTGGCGGAGCAGGACCATCCGCGCTCTAAGCAGAACAGAAGCTTAACTAAATTGGCGGAGCAGGACCATCCGCGCTCTAAGCAGAACAGAAGCTTAACTAAACTGGCGGAGCCCCTGAAATTGAATCACAGCAATGCTATTTTCTTGCCCACTGTCAAAGACATCAGCGACCGCAAACGCCATATTTATGTGGAAATTGGGGGTAACAGTAACAAGACTGTCAATGCAGATGCAGGGTGGTCCTTGGCTTCTTATCCAAAGCAGAACCAAACATTTGATACTTATGCCCTGAATATGAGTGGATTCAAGTCTCTGCCACGGAGGTCTCTGAACTCAATAAAGCAGGTAGTGCGAGATACTGGCAGCAGCAGAAGCAGAGAGCGTTTCGACATTGCAGGATGGCTGAGTGAAATGAGTGTTAGCGATGGGGATTTTGTGGTTGTGAAAATGGGATTCGAAAATGTGGCCATAGAGATGAAGAATATGAGAGGAACAGGATTCATGCGTCTCATTGACGAGCTCTTCCTGCTGTGTTCTTCGGAATTATCTGAAGAAGTTGATGGGGAATGCCTGCAGTTCCTTCACACTCTCAGTGATCAGGGTGTCTTTGTCAATCCATGGTAAGGCATAAGCAGGTAATTAGCATATCCTAATAGAATAAATAAACTGGTTGATAAACGTCACCCATACCCCTACCCTACCAGTAGAGTAGGGGAAGGTAAGAGGATACAATAAATGCAAGTTCTATCACCAATTCCGGAGTAGGGTAAGGTAAGAGAATACAATAAATGCAAGTTCTATCACCAATTCTGGTTTATCG

Ace file of the UniGene sp_v2.0_unigene28440 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyltransf_11 domain containing protein	-	-	3.0e-09	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR4

Fln msg: your sequence is shorter than subject: 497 - 528

Fln protein: MAARLLKLELIYSCVGKKFMVRMLFLTIALTAVSVLYTLHDAGTCAYLSDCSDDFMVDFAHPSWPLISLQSVQDQVQREMSGPRVRPSEGLAIESYPQIKIWAKKTWKEKVEFYSAIFRDLIAQGLLRSGFKALCLGASSGVSVEAMRENGLRDTTAVDERHSLGLMKAGNRRLPFSDNSFDFVFSGSFDRATVPALLASEIERTLKPNGVAVMLASHRRPNMGKPSNLMNSLNPVVALFKCSDVIHVNTSGSPNSQKTTVIALRKRPSKPLGLIKDYARSKQNRSLTKLAEQDHPRSKQNRSLTKLAEQDHPRSKQNRSLTKLAEPLKLNHSNAIFLPTVKDISDRKRHIYVEIGGNSNKTVNADAGWSLASYPKQNQTFDTYALNMSGFKSLPRRSLNSIKQVVRDTGSSRSRERFDIAGWLSEMSVSDGDFVVVKMGFENVAIEMKNMRGTGFMRLIDELFLLCSSELSEEVDGECLQFLHTLSDQGVFVNPW*

Protein Length: 498

Fln nts: ACCGCTGCTAGATTTTGCACACGATAAATATCTTCTGCCGCTACTCTTGCTGGTAAATCTCCACTTTTTCTTTCCCTCGCTCGATTTCAAAGATTGGGCAATGGCCACAGCATTTTCTCCAATCAGAAAGAATTCGAAAAGATCAAATCTTGCATTAATTTCAGGTCTGCAAATGGTGAACTGAGCAACAACATAAGGTCAGTGATTGTTCATTTAGATCCATAATATTTCTTTGGCGAGTATTTCTTTGCATTTGACTGCCCCTTGTGGTGGAACTTTAGAAGCCTCC_-_ATGGCTGCGAGACTGTTGAAGCTGGAGCTCATCTACAGCTGCGTGGGCAAGAAGTTCATGGTCCGCATGCTCTTCTTGACAATTGCCCTCACTGCAGTGTCTGTTCTCTACACCCTACACGACGCTGGGACATGTGCCTATCTGTCTGACTGCTCAGATGATTTCATGGTCGATTTCGCCCATCCCAGTTGGCCGTTGATCTCATTGCAAAGCGTACAAGATCAGGTGCAGCGGGAGATGTCCGGACCTAGGGTCAGGCCATCCGAAGGTCTAGCGATCGAATCTTATCCCCAAATCAAGATCTGGGCCAAGAAGACGTGGAAAGAGAAGGTAGAATTTTATTCAGCGATCTTTCGCGATCTAATCGCGCAGGGGCTCCTGCGCTCCGGCTTCAAAGCTCTCTGCCTCGGTGCCTCCTCGGGTGTCTCCGTAGAGGCAATGCGGGAAAACGGCCTGCGGGACACCACTGCAGTGGACGAAAGGCACTCATTAGGGCTGATGAAGGCGGGCAATCGGCGCCTTCCCTTCTCAGACAATTCCTTCGACTTTGTTTTCTCAGGGTCGTTTGATCGAGCCACAGTGCCAGCGTTGCTTGCCTCCGAGATCGAGCGCACGCTCAAGCCAAACGGCGTCGCAGTGATGCTGGCCTCCCACCGGCGCCCGAACATGGGAAAGCCCTCCAACCTCATGAATTCCCTGAACCCCGTGGTGGCCCTGTTCAAATGCTCTGATGTCATTCATGTGAACACATCCGGGTCGCCTAATTCCCAGAAAACCACAGTGATTGCACTCCGTAAGAGGCCTTCTAAGCCGCTGGGATTGATTAAGGACTATGCGCGCTCTAAGCAGAACAGAAGCTTAACTAAATTGGCGGAGCAGGACCATCCGCGCTCTAAGCAGAACAGAAGCTTAACTAAATTGGCGGAGCAGGACCATCCGCGCTCTAAGCAGAACAGAAGCTTAACTAAACTGGCGGAGCCCCTGAAATTGAATCACAGCAATGCTATTTTCTTGCCCACTGTCAAAGACATCAGCGACCGCAAACGCCATATTTATGTGGAAATTGGGGGTAACAGTAACAAGACTGTCAATGCAGATGCAGGGTGGTCCTTGGCTTCTTATCCAAAGCAGAACCAAACATTTGATACTTATGCCCTGAATATGAGTGGATTCAAGTCTCTGCCACGGAGGTCTCTGAACTCAATAAAGCAGGTAGTGCGAGATACTGGCAGCAGCAGAAGCAGAGAGCGTTTCGACATTGCAGGATGGCTGAGTGAAATGAGTGTTAGCGATGGGGATTTTGTGGTTGTGAAAATGGGATTCGAAAATGTGGCCATAGAGATGAAGAATATGAGAGGAACAGGATTCATGCGTCTCATTGACGAGCTCTTCCTGCTGTGTTCTTCGGAATTATCTGAAGAAGTTGATGGGGAATGCCTGCAGTTCCTTCACACTCTCAGTGATCAGGGTGTCTTTGTCAATCCATGGTAA___GGCATAAGCAGGTAATTAGCATATCCTAATAGAATAAATAAACTGGTTGATAAACGTCACCCATACCCCTACCCTACCAGTAGAGTAGGGGAAGGTAAGAGGATACAATAAATGCAAGTTCTATCACCAATTCCGGAGTAGGGTAAGGTAAGAGAATACAATAAATGCAAGTTCTATCACCAATTCTGGTTTATCG

Fln Alignment:

AllPineV4_c3832___MAARLLKLELIYSCVGKKFMVRMLFLTIALTAVSVLYTLHDAGTCAYLSDCSDDFMVDFAHPSWPLI---SLQSVQDQVQREMSGPRVRPSEGLAIESYPQIKIWAKKTWKEKVEFYSAIFRDLIAQGLLRSGFKALCLGASSGVSVEAMRENGLRDTTAVDERHSLGLMKAGNRRLPFSDNSFDFVFSGSFDRATVPALLASEIERTLKPNGVAVMLASHRRPNMGKPSNLMNSLNPVVALFKCSDVIHVNTSGSPNSQKTTVIALRKRPSKPLGLIKDYARSKQNRSLTKLAE---------------QDHPRSKQNRSLTKLAE---------------QDHPRSKQNRSLTKLAEPLKLNHSNAIFLPTVKDISDRKRHIYVEIGGNS----NKTVNADAGWSLASYPKQNQTFDTYAL----NMSGFKSLPRRSLNSIKQVVRDTGSSRSRERFDIAGWLSEMSVSDGDFVVVKMGFENVAIEMKNMRGTGFMRLIDXXXXXXXXXXXXEVDGECLQFLHTLSDQGVFVNPW
B8LQR4_______________MAAKLLKLELIYGCMGKKLMLRTLFFAIAQAAVSVLYAVHDAAPCVYISDCPDDFMVDFDRPRWPLIRRNSLQNVRDQARPEISEPNVRLSGGLGIESHPPIKFWANKTWREKVEFYSAIFRDLAARGLLRSGLKALCVGASSDVSVVALRENGLLDATAVDDMRSLAPMKADNWRLPFADNSFEFVFSGSFDRATVPALLASEIERTLKANGVAVMLVSQRRPNMGKPSNLMHSLSPVVALFKCSDVVHVTTSGLPNSQETTVIALRKRPS---------GVSKQNRSLTKRPEPKSMNHSNAIHLPKVKDYPRSKQNGSLTKLAEPRTMNRSNAIHLPKVKDNPRSKQNRSLTKLAEPLTMNHSNAIYLPIVKDISDHKRHIYVEIGGNSQSKVNNTVNADAGWFLASYPKQNQTFDTYALNSHANMSGSESLPRRSLNSIKQVVGDNGSSRSRERFDIGGWLSEMSVSDEDFVVVKMGFEHVTREMINKRGTGFMRLIDELFLQCSSELSDKVHMECLQFLQTLRDNGVFVHRW

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
1232	80		20		0.995493
1305		16		83	0.994512
1335	28		71		1.0
1346		12	87		0.992554
1347	87	12			0.992554
1348	87	12			0.992554
1350			87	12	0.992554
1501	16		83		0.994512
1543	83		16		0.994512
1571			83	16	0.994512
1704	88		11		0.991528
1730	25		75		1.0
1733			87	12	0.992554
1735		81		18	0.999994
1736	90			10	0.90298
1738	90	10			0.90298
1739	10			90	0.90298
1741		90		10	0.90298
1742	90			10	0.90298
1743	90			10	0.90298
1745	10		90		0.90298
1747	90			10	0.90298
1748	90			10	0.90298
1756		90	10		0.90298
1764	11			88	0.991528
1782	88		11		0.923564
1786	11			88	0.991528
1788	88			11	0.923564
1809	87			12	0.992554
1825	85			14	0.993533
1849		16		83	0.994512
1856	16		83		0.994512
1859			16	83	0.994512
1870		16		83	0.994512
1871	16		83		0.994512
1874	16		83		0.994512
1881		83		16	0.994512
1888	20	80			0.995493
1906	75		25		0.996473
1915			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain