SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28400

Length: 1848 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28400 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pex16 domain containing protein	-	-	1.4013e-45	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	shrunken seed protein	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	60%
Blast2go	peroxisome organization	GO:0007031	Biological Process	60%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	60%
Blast2go	peroxisome	GO:0005777	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV1

Fln msg: your sequence is longer than subject: 380 - 129

Fln protein: METYKQWVRANRDFVSSIESFAQTMTWFLPERFSASEIGPEAVAALVGLIAAFNQHIIENSPGPSRNVGQNLQGHFQHPSFGQDSRFPWSLCISAVKEVEVLIEVAAEHYVGKDEKWSFVAGTEAVKAFLRLILLHKSGYKMLIDGGATVNVDDAPRPPDMPSMHFSGHPEGGRMPTCWQTHPNYNSHSLEGRALRALHKFGEKARTEHLSWLSGEQEYTGTSSHLLESDNRSTLVSLWHEKRVTSWSFILGEVLLILRPLVYVLLIRRYGLGAWKPWLVSLAVDLTGTTIISRLTSPGLLRNGRGYSLSKVEKDEIKRRQLLWAFYVMRDPFFSKYTRHRLEYFEQLLKPVPVVGTLIAKAVELLVGVQTRYSYISAS*

Protein Length: 381

Fln nts: AAACGCTCTCCAAAGCTCTCCGAGTCCAACTTCAGGAGTCTGGGGTTGGATGGGAGCGTTTGCTTTGTTTTAAATCAAATGCTTAAATCTTAATAAACACATAAACCTGCAAGTGCCAGTGATCGAGTCGAGTGGGCAATAGTGGTG_-_ATGGAGACATACAAGCAATGGGTGAGAGCCAATCGGGACTTCGTATCTTCGATAGAAAGCTTTGCCCAGACTATGACTTGGTTCCTTCCTGAAAGGTTTTCGGCCTCTGAGATTGGACCTGAAGCTGTTGCCGCTTTAGTGGGTTTAATTGCGGCCTTTAATCAACATATTATAGAGAATTCTCCTGGACCTTCGAGGAACGTGGGTCAGAATCTGCAAGGCCATTTTCAGCACCCATCTTTTGGTCAAGATTCAAGATTTCCTTGGTCCTTATGTATATCTGCAGTGAAAGAGGTGGAGGTTTTAATTGAGGTTGCGGCAGAGCATTATGTTGGAAAAGATGAGAAATGGTCTTTTGTTGCTGGCACGGAGGCTGTTAAGGCATTTCTTCGGTTGATTTTGCTGCACAAGAGTGGATACAAAATGCTAATTGATGGAGGAGCAACAGTTAATGTTGATGATGCTCCTAGGCCTCCTGACATGCCATCTATGCATTTTAGTGGGCATCCTGAAGGAGGAAGGATGCCAACTTGTTGGCAAACTCATCCGAACTATAATTCACACAGTTTGGAGGGCAGAGCTTTGCGGGCCTTGCACAAGTTTGGAGAAAAGGCACGGACAGAACATCTGTCATGGTTATCTGGGGAGCAAGAATACACTGGAACAAGCTCACACCTACTGGAATCCGACAACAGATCAACATTGGTGTCTCTCTGGCATGAAAAGAGAGTTACTTCTTGGTCTTTCATATTGGGGGAGGTGCTTCTCATTTTAAGGCCACTTGTATATGTGCTACTTATTAGACGGTATGGGCTTGGAGCTTGGAAGCCTTGGTTGGTGTCACTGGCTGTGGACTTAACTGGAACAACTATTATTTCTAGATTGACATCACCAGGCCTGTTAAGGAATGGAAGAGGTTATTCATTGTCCAAAGTGGAGAAAGACGAGATAAAAAGAAGACAGTTGCTATGGGCATTCTATGTCATGAGAGACCCTTTTTTCAGCAAGTATACGAGGCATCGGCTGGAGTATTTTGAGCAACTGTTAAAGCCTGTTCCTGTAGTAGGAACTCTAATAGCAAAGGCAGTAGAGCTTCTTGTTGGTGTCCAAACACGCTATTCGTACATTTCAGCATCCTGA___GAAGGGAAGTAAATTTGATTGATGATCTGCACAATCTTTATCAATCTGTAGCTCCATACATAGTATAAAATAGTTGAGATTATGCTACTTCCTGGACCATCTCTGAAGGGTTATTTCTCAATGCATCAGCTGTCCTGAAGTATTTGCTTATGTTATTCTTTCTCAATTTATGAATTAGCACCAACTTCAAAGGCTTCGATGAAGTTAAGTAGGCTGGATGCTTGAGATATATGAATAAGGTTGTAAAATTGTAGCAATAAGATAGTTAGGCTGCCATCTGAAATTTTTAAGATGAACAAAAACTGTAAAATGGAGATGTTGATCTCTAAAGGTGTTCAATATCTTGTTTTTCACCTGAGTTCTCAAACATTTCTGAGAAGAATATTATGGCAGCATACTGCAGCTGGCTGGCTTGTGGATGGAATCACTTAAATGCCTGCTTGAGCAATGTTCACGAAGCCTGTTCTTTGTGGCACCGTTTCTGTATTCGGAATGATGAATTAAATATAAATTTTCAGTAAAAACTGGGCAAAAGAAATCGCGGCTCAAGATTTCAGAGTC

Fln Alignment:

AllPineV4_c3275___GLGAWKPWLVSLAVDLTGTTIISRLTSPGLLRNGRGYSLSKVEKDEIKRRQLLWAFYVMRDPFFSKYTRHRLEYFEQLLKPVPVVGTLIAKAVELLVGVQTRYSYISAS
A9NWV1_______________GLGAWKPWLVSLAVDLAGTTIISRLASPGLTGSGRGYSLSNAEKEEIKRRRLLWAFYVMRDPFFSKYTRHRLEYFEQLLKPVPVIGTLIAKAVELLVGVQTRYSYISAS

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
906	20	10			0.999998
907		80	20		0.999996
908		80		20	0.999996
909		80	20		0.999996
910	90			10	0.90298
911		20	10	70	0.999998
914		90	10		0.90298
915		90		10	0.90298
917	20		80		0.999996
918	10		20	70	0.999998
919		80	20		0.999996
920	10			90	0.90298
921	70	20	10		0.999998
922	90	10			0.90298
923		30		70	1.0
924	80		20		0.999996
926		20	10		0.999999
931		12	87		0.992554
932		87	12		0.992554
935	87		12		0.992554
945			85	14	0.993533
947	14	85			0.993533
948		85	14		0.993533
950			14	85	0.993533
952	85	14			0.993533
954	85		14		0.993533
955		14		85	0.993533
956		14	85		0.993533
960	85		14		0.993533
966		85	14		0.993533
967	16			83	0.994512
970		83	16		0.994512
993			80	20	0.995493
1031			16	83	0.994512
1033			16	83	0.994512
1034	16		83		0.994512
1035	16			83	0.994512
1036		16		83	0.994512
1462		75		25	0.996473
1463		75	25		0.996473
1465	75		25		0.996474
1466			75	25	0.996474
1469	75	25			0.996474
1471			25	75	0.996473
1473		25		75	0.996474
1474	25			75	0.996474
1475	25		75		0.996473
1476	75		25		0.996473
1477	75		25		0.996473
1480	25			75	0.996473
1481		25		75	0.996473
1485		75	25		0.996473
1494	20		80		0.995493
1495	20		80		0.995493
1498		80		20	0.995493
1546	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain