SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28348

Length: 2112 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28348
CGTCGTGACCTTGGCTGTCACTCAGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACGTCGTGACCTTGGCTGTCACTCAGCGATTCTGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAATTTTATGTATTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Ace file of the UniGene sp_v2.0_unigene28348 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ	-	-	53%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	5 -3 exoribonuclease 3-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	68%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FQ03

Fln msg: your sequence is shorter than subject: 634 - 1020

Fln protein: VVTLAVTQKVEDEVTDETAKAKENAEERRDLGCHSAILEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVRTQALWHEDTGRRHQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMSSFVNSKNHNLSPKPRPAGPQGYENGFHFSGGQVSNGGMHKSQQNAKSAALVDDHVSTQSTPNRNAKNKRGRGSAALVDDHVSTQSTPNRKAKNKRGRGRRDHSQQQRNGESYDSDRQQQRSDVIHADSYQRQLDTHYQSHQANTEQYNQLPFVHVDTQRHLPRMRPPFEGITRGSSLAQMYSRAPSATINGYTINRPYPTVNGYPLNNGVYDNIQGRARSAMLPGNMYYSRY*

Protein Length: 635

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAGGTTGAAGATGAAGTAACTGATGAAACTGCAAAGGCAAAAGAAAATGCGGAGGAACGTCGTGACCTTGGCTGTCACTCAGCGATTCTGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAA___TTTTATGTATTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Fln Alignment:

AllPineV4_c2777___KENAEERRDLGCHSAILEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVR-TQALWHEDTGRR--------------HQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMS----SFVNSKNHNLSPKPRPAGPQGY
Q9FQ03_______________RENKEELKTK-LKELIREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQMGTD---RYQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGY

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
992		88		11	0.923564
1292	25		75		0.996473
1346	75	25			0.996473
1349			20	80	0.995505
1379	20		80		0.995505
1411		75		25	0.996475
1551	83		16		0.994512
1596		83		16	0.994512
1689		87		12	0.992554
1704			25	75	1.0
1708	75	25			1.0
1709	25			75	1.0
1711		25	75		1.0
1713	25			75	1.0
1714	25			75	1.0
1716	14		28		1.0
1717			14	28	1.0
1718	75	25			1.0
1722	25		75		1.0
1723	75	25			1.0
1902	80	20			0.995498
1903		20	80		0.995498
1905	20			80	0.995499
2031	66			33	0.997456
2032			66	33	0.997456
2034			66	33	0.997456
2035	66			33	0.997456
2044	33		66		0.997471
2047		66		33	0.997476
2048	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain