SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28330

Length: 1114 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28330

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RVT_2 domain containing protein	-	-	1.0e-14	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	copia-type polyprotein	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3		IPR010256	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 288 - 363

Fln protein: S*PWLSLIGIEVTQHPKSIFLSQKKYIGDLLNRFGMTECNPLSTPMEQNLKLTSIEGKEFEDATKYRQLVGSLIYLTTTRPDISFAVGILSRFMQKPCEGHWSAAKRVLRYLKGTQDLGIKYTQVDDFSLIGYSDSDFDGDKETGVSSSGYAMSLGSGAVSWRSRKQSVPTDSTTEAEYVAAAEATKEIVWLRKILEDLQVKQVQSTPLMIDNTSAIKLAKNPKFHDRTKHINTKYHLIRHHVEAKTIHLRHCSTNDQIADIFTKALGREKLERFRTMLGLTNIPSD*

Protein Length: 289

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGCATTGAAGTAACCCAACATCCGAAATCTATATTTCTTTCTCAAAAGAAATACATTGGAGATTTGTTAAACAGATTTGGCATGACAGAGTGCAATCCTCTTTCTACTCCAATGGAACAAAACTTAAAGCTCACATCTATTGAAGGAAAGGAATTTGAGGATGCAACAAAGTATAGACAGCTTGTAGGAAGTCTCATCTACCTCACTACTACCAGACCAGACATTTCATTTGCTGTTGGAATCCTCTCCAGGTTTATGCAAAAGCCTTGTGAGGGACATTGGTCTGCTGCAAAAAGAGTTCTAAGGTACTTGAAGGGAACTCAAGACCTTGGAATCAAGTATACACAGGTGGACGACTTCAGCTTGATTGGATACTCTGATTCAGACTTCGATGGAGACAAAGAAACTGGGGTATCTAGTTCAGGATATGCTATGAGTCTTGGATCAGGAGCTGTCTCCTGGAGATCACGCAAACAATCAGTTCCAACAGATTCCACAACAGAAGCAGAATACGTGGCAGCAGCTGAAGCAACGAAAGAAATTGTGTGGCTCAGGAAAATTCTTGAAGATTTGCAGGTAAAACAAGTACAATCAACTCCACTCATGATTGATAACACATCTGCAATAAAGTTGGCCAAGAACCCAAAGTTCCATGATCGTACTAAGCACATCAATACTAAATATCATCTGATCCGACATCATGTTGAGGCCAAAACAATCCATCTCCGTCATTGTTCCACAAATGACCAAATTGCAGACATCTTCACCAAAGCGCTTGGAAGAGAAAAGCTTGAAAGATTCAGAACGATGCTTGGACTCACCAACATCCCTTCAGATTAA___GGGGGGGAATGTTGACACCTAATCCGAAACGGATGAGGTGAAGCCGGACAGTCATCTAGAAGATGAACTGATCCGTTTTATGTATGTATAAATATAGTTGTCTAAATGAATAAAATTATCAGTTGTCTTGTGCGCTCAATAATCTGGAGTTACCTTGGCCTGACAGTTCGCCCTAAGAGGTTGATGCAACAGAAAGAAAAGAAAAAGCATAAGCCATAATATTAAAATGCAAAAGATTAGTAGACATT

Fln Alignment:

AllPineV4_c2406___IGIEVTQHPKSIFLSQKKYIGDLLNRFGMTECNPLSTPMEQNLKLTSIEGKEFEDATKYRQLVGSLIYLTTTRPDISFAVGILSRFMQKPCEGHWSAAKRVLRYLKGTQDLGIKYTQVDDFSLIGYSDSDFDGDKETGVSSSGYAMSLGS
B8LKV8_______________LGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYSTSNNLQLVGYTDSDFAGSIDDRKSTSGYAFHLGT

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
652	66	33			0.997452
654		75	25		0.996479
655			25	75	0.996479
656	33		66		0.997452
663	80			20	0.995499
665			20	80	0.995493
666			20	80	0.995493
698	25			75	0.996473
704		75		25	0.996473
707	20	80			0.995503
719	83			16	0.994516
724		66		33	1.0
726	20		80		0.995493
729		80		20	0.995493
730		80		20	0.995493
735		20		80	0.995493
738		20		80	0.995493
776		80		20	0.995493
779	80		20		0.995493
780		50		50	1.0
784		60	40		1.0
785	16	83			0.994513
795	80		20		0.995493
799		83		16	0.994513
805		80		20	0.995493
833	75	25			0.996473
840			75	25	0.996473
843		60		40	1.0
855	25			75	0.996473
922		66		33	0.997457
955			33	66	0.997452
957	66		33		0.997452
962	33			66	0.997452
975		33		66	0.997452
977	33		66		0.997452
978		33		66	0.997452
982	66			33	0.997476
994	33	33		33	0.997737
996	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain