SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28303

Length: 1515 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28303 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid kinase-like protein [Arabidopsis thaliana] gb\|AAN12957.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30713.1\| amino acid kinase-like protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	aspartate glutamate uridylate kinase family protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACE1

Fln msg: your sequence is longer than subject: 336 - 72

Fln protein: MDQAAAAVDCPQPHKLKRPLRCIVKLGGAAITRKDELETINEKNLSSVTYQLRQAMMSHSTVIQTMDWSKRVGTEELVVPDSFGDQQISLDAFIVVHGAGSFGHFQASKSGVHKGGLPSPAVTAGFVATRISVTSLNLEVVRALAKDGIPALGISPLASGWSTYKRNVENANISEVARIIDSGFIPVLHGDAVFDSAQGCTILSGDVIIRQLAQELMPQYVVFLTDVPGVFDRPPTEANAVLLKEIVVNEDGSWSIVKPVLPHMNNAVKTATAAHDTTGGMATKISEAAMIAKFGIDVYIVQAGTDHSLKALNGELKEEMPDNWIGTIVRNSKLF*

Protein Length: 337

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATTGTATAGCAAAGCAAGAGGTTTCTGAAA_-_ATGGATCAAGCGGCGGCGGCTGTGGATTGTCCTCAACCGCACAAGCTTAAAAGGCCTCTACGGTGCATTGTTAAACTTGGTGGTGCAGCAATCACTAGGAAAGATGAACTTGAGACCATTAATGAGAAAAATCTTTCTTCAGTTACTTATCAGCTAAGGCAAGCAATGATGAGTCATTCTACAGTAATACAAACGATGGACTGGAGCAAGAGAGTTGGAACAGAAGAATTGGTTGTTCCAGATTCTTTTGGTGATCAGCAAATAAGTTTAGATGCATTCATTGTGGTTCATGGTGCAGGATCTTTCGGGCACTTTCAGGCAAGTAAATCTGGTGTGCATAAAGGAGGATTACCCTCGCCTGCTGTGACTGCTGGGTTTGTGGCTACAAGAATATCTGTAACTTCTCTTAATCTTGAAGTGGTGAGGGCACTTGCAAAAGATGGCATTCCCGCACTTGGTATTTCTCCTTTAGCTTCAGGCTGGTCAACTTACAAACGAAATGTCGAAAATGCCAATATTTCTGAAGTTGCACGCATCATTGATTCAGGCTTCATTCCTGTGTTGCATGGAGATGCGGTGTTTGACAGCGCTCAGGGTTGCACAATTTTAAGCGGGGATGTCATTATACGCCAACTTGCACAGGAACTGATGCCACAATATGTTGTCTTCCTTACCGATGTTCCAGGAGTGTTCGATCGCCCCCCAACAGAGGCCAATGCTGTGCTGCTAAAAGAAATCGTTGTGAATGAAGATGGCAGTTGGTCAATTGTGAAACCAGTGTTGCCTCATATGAACAATGCAGTGAAAACGGCCACTGCAGCACATGATACAACAGGAGGAATGGCTACCAAAATTTCAGAGGCTGCAATGATAGCCAAATTTGGTATAGATGTTTATATTGTTCAGGCTGGTACTGATCACTCTTTGAAGGCCCTAAATGGTGAGCTAAAGGAAGAGATGCCGGACAACTGGATTGGAACAATTGTTAGAAATTCGAAATTGTTTTGA___AGGAATCACATGATGCTGTTCAAGTGTGGGCATCCTGAACCTTGAAATGGGAGAGTTTGGAGATTCTTGCATTAGAAGTTAGATGAAACAATCACACAACCTCAAACCTCAAACGTCTTCATAGACATATGCTATTCTGGTTAGATACACACCAATATATACTACACCGAAAGTGGTCTTGTTCTTTTTATTACTTTTTAACTGTATACCCATCCATACAGCTGTATGCAGTTGACAAAGTTTTAGATTTTCTATTACAGTATAAATTGCTAAACTTCATTCTTGCTGCTGGAATATTTGTATGCATATGCTCACATGCAGGGGCATTGTTGCATAAATGGGCAACATGGTTTAGCATTCTCTTTACATACTTGCATCTTTTCCGGGAAATGCTGCTTATATAACTTCATGGAAGAAGCACATCATGGGTCAGAGAGGTATCAGGATTTC

Fln Alignment:

AllPineV4_c2046___MNNAVKTATAAHDTTGGMATKISEAAMIAKFGIDVYIVQAGTDHSLKALNGELKEEMPDNWIGTIVRNSKLF
D5ACE1_______________MNKAVQTATAAHDTTGGMATKISEAAMIAKLGIDVYIVQAGTDHSLKALNGEPKEEMLDNWIGTIVRNSKSF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1225		12		87	0.992554
1296	10	90			0.90298
1297	90		10		0.90298
1298		11		88	0.923564
1301	11			88	0.991528
1302			11	88	0.991528
1306	11			88	0.923564
1307		11		88	0.923564
1309	11	88			0.991528
1311			11	88	0.991528
1328	12		87		0.992554
1334	87			12	0.992554
1335	87		12		0.992554
1337		12	87		0.992554
1340		12		87	0.992555
1341		12		87	0.992555
1342	12			87	0.992555
1343	12			87	0.992555
1344			12	87	0.992554
1345		88	11		0.923564
1350		11		88	0.923564
1351	88		11		0.923564
1353		11		88	0.923564
1507		33		66	0.997456
1508		33		33	0.997728
1509		33	66		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain