SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28283

Length: 1663 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homoserine dehydrogenase n=1 Tax=Picea sitchensis RepID=D5AEG5_PICSI	-	-	84%
FL-Next	sp=Homoserine dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase-like protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	0.0	79%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Aspartate kinase domain	IPR001341	-	-
Sma3	Homoserine dehydrogenase, catalytic	IPR001342	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aspartate/homoserine dehydrogenase, NAD-binding	IPR005106	-	-
Sma3	Bifunctional aspartokinase/homoserine dehydrogenase I	IPR011147	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aspartate kinase, conserved site	IPR018042	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG5

Fln msg:

Fln protein: MSKRMKIISLVIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDSQSLLMAAKVREAELSDECLKNICHLKSSGSPLSSLDSIGNDGFRVFVVHEIITCLLDIASSLGQSTGLAFVDCSASDQTVELLYKVLDLGCCVVLANKKPLTEKIDLYEKIVSNRRCLRYESTVGAGLPVICSLDRLIASGDPIQCITGALSGTLGYVMSELQGGHPFSEIVRAAKILGYTEPDPRDDLSGMDVARKALILARLLGWRINLENVEVESLYPSEMGPDAMSIEDFLNKGLPTLDEEMVERIKNAASNGNVVRYVCKIDNSRCKVGLLELPKNSPIGQLKGSDNLVEVYSRCYKALPLVIQGAGAGNDTTAAGVLADIVDLQDLFHSCD*

Protein Length: 387

Fln nts: TGTTAGCTGGTAGAGTTCTACCTCGGAAGGAAATGGAAGTCCCACGAGTACATAGCTTAAGTCCTTTTTTCAAAAAATGTTGTGAAAGCGGCAAGTGAAAACCCAGAGATCGACAACAGGGTTACCTAGCCACATTTTCAGCGAGCAAAGGCACGCCAGGAAAGGAAACGAGGAGCAAGCGAAA_-_ATGTCGAAGAGGATGAAGATAATTTCATTGGTGATAATGGGGTGTGGAGGAGTTGGTCGGCAGCTGATTCACCACATTGTCAACACAAGAGAGTTGCATGCCTCTCAGGGAATACATTTAAGAGTGCTGGGTGTTTGTGACTCCCAATCTCTACTAATGGCTGCAAAAGTTCGAGAGGCAGAGCTAAGTGATGAATGCTTGAAGAACATTTGTCATCTAAAGTCTTCTGGCTCTCCTCTATCATCATTGGATTCAATTGGTAATGATGGATTTCGGGTATTTGTAGTTCATGAAATAATCACCTGTCTTTTAGATATTGCGAGTTCTTTGGGCCAGTCAACAGGTTTGGCTTTTGTTGACTGCTCTGCAAGTGATCAGACCGTCGAGCTGCTGTATAAAGTTTTAGATCTTGGTTGCTGTGTCGTTTTAGCAAACAAAAAGCCACTCACAGAAAAAATTGATCTTTATGAGAAGATTGTGTCAAATCGTCGCTGCCTTCGTTATGAGTCAACGGTTGGAGCAGGCTTGCCTGTAATATGTTCTTTGGATCGTTTAATAGCATCCGGTGATCCTATACAGTGCATCACGGGTGCTCTAAGTGGTACATTGGGATATGTAATGAGTGAACTACAAGGAGGACACCCTTTCAGTGAAATTGTTCGAGCAGCTAAAATCCTGGGTTACACAGAACCAGATCCACGTGATGACCTTAGTGGAATGGATGTGGCAAGGAAGGCTTTGATCCTAGCTCGGTTGCTTGGCTGGCGAATCAACTTGGAGAATGTTGAGGTTGAGAGTCTTTATCCTTCTGAAATGGGACCAGATGCTATGTCAATTGAGGATTTCCTAAATAAAGGCCTTCCAACACTTGATGAGGAAATGGTAGAGAGGATTAAGAATGCTGCTTCAAATGGCAATGTTGTTCGTTATGTGTGTAAAATTGACAATTCCAGGTGTAAAGTAGGGCTTTTGGAGCTGCCGAAAAATTCTCCAATAGGGCAACTGAAAGGAAGCGATAATCTGGTAGAGGTATATAGTCGATGCTACAAGGCACTACCTCTGGTTATTCAAGGAGCTGGAGCTGGTAATGACACCACAGCGGCAGGAGTTCTAGCGGATATCGTTGATTTACAGGACCTATTTCATTCTTGTGACTAG___GTTCCTCTATGTTGTAACTATTTGCTACTCCTTTGAACTGTTTGAAGAAACCTTTGCCATCTTGCACGATGTTTTCATGTGTGAATTTATTTGCGAATCGAACTTCATATCATAAGAATGGGATAATTGATATCTTGATTTCTTCCGTCAGTTCTGTTACAATTTGATCTAGTCAGTTTGACGCTAGGCAGGGTGTCGTACTCATCTCAGGAGGCAATGAGATATTTCTCGATTACAAAATGTTGTTTGGAATTATGGACTGTTTATTTGCCACCGTGGGTGTAAAACTCCATTTTAAATAATATGGTAGTTCGGTTTTCC

Fln Alignment:

AllPineV4_c1694___EQAKMSKRMKIISLVIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDSQSLLMAAKVREAELSDECLKNICHXXXXXXXXXXXXXIGNDGFRVFVVHEIITCLLDIASSLGQSTGLAFVDCSASDQTVELLYKVLDLGCCVVLANKKPLTEKIDLYEKIVSNRRCLRYESTVGAGLPVICSLDRLIASGDPIQCITGALSGTLGYVMSELQGGHPFSEIVRAAKILGYTEPDPRDDLSGMDVARKALILARLLGWRINLENVEVESLYPSEMGPDAMSIEDFLNKGLPTLDEEMVERIKNAASNGNVVRYVCKIDNSRCKVGLLELPKNSPIGQLKGSDNLVEVYSRCYKALPLVIQXXXXXXXXXXXXVLADIVDLQDLFHSCD
D5AEG5_______________KRAKMSKRMKIIPLLIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDTQSLLMATNVPEAELSDECLKNICHLKSSGSPLSSLDSIGNDGFQVFAVHEIVIRLLDIASSLGQSTGLAFVDCSASDQTVELLNKVLDLGCCVVLANKKPLTAKIELYEKIVSNRRRLRYESTVGAGLPVISTLNRLIASGDTIQCITGALSGTLGYVMSELQGGHPLSEVVQAAKILGYTEPDPRDDLSGMDVARKALILARLLGRQINLENVEVESLYPSEMGPDDMSVEDFLNKGLPTLDEAMEERIKNAASNDNAVRYVCTIDNSRCKVGLLELPENSPIGQLKGSDNLVEVYSRCYKALPLVIQGAGAGNDTTAAGVLADIVDLQDLFHSHD

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
507	25			75	0.996473
510		75		25	0.996473
633		83		16	0.994512
696		14		85	0.993533
711	83			16	0.994512
726	80	20			0.995493
818	90		10		0.90298
854		10	90		0.90298
1008	80		20		0.995493
1009	80	20			0.995493
1022	20		80		0.995495
1023	20	80			0.995495
1025	80		20		0.995495
1082		20		80	0.995493
1155	16			83	0.994512
1156	83		16		0.994512
1158	83		16		0.994512
1162			80	20	0.995493
1163	20		80		0.995493
1341	20			80	0.995493
1430		16		83	0.994512
1450	16		83		0.994512
1458	16		83		0.994512
1540		83		16	0.994512
1575	80			20	0.995493
1611	80			20	0.995493
1621	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain