SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28278

Length: 1224 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28278

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein SENSITIVITY TO RED LIGHT REDUCED, putative n=1 Tax=Ricinus communis RepID=B9S4K4_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	sensitivity to red light reduced protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	66%
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sensitivity To Red Light Reduced-like, SRR1	IPR012942	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F1

Fln msg: your sequence is longer than subject: 301 - 249

Fln protein: MPSEMGEEKAEISEEQKAEMAWTVVVGRHRRGKRKTNTNSNAYGCTNLLDSCNQLHSQSIADCSIQQGESEPMDDPEEEERLKKKMHNSLKKLEDSDFYNKFAEQLQSPQVLNNILRAANAESEQQIQMVVYGIGSIANSEKSRLQLCLALLLKRNFSWVGRIEVFDPILSASECRIIESLGCTILTVNERGRRTAESPTLFFMPHCAALLYDNVLRANWSPVLLNRIILLGNSFGCYREQFSQFHRSPVASTSYVLAIADHVNEFRIQTVSDDFFAAFHQTSWHFFALDASQDLKVLSV*

Protein Length: 302

Fln nts: CGAAGATTGGGCAGACGTGGCAACGCGCGATTGGTATCGAGGTCTGGCAGTGAAAT_-_ATGCCTTCAGAGATGGGAGAGGAGAAAGCAGAGATCTCTGAAGAGCAGAAAGCAGAGATGGCATGGACTGTTGTAGTGGGTCGTCACAGGAGAGGCAAGAGGAAAACCAATACCAATAGCAACGCATATGGCTGTACAAATCTCTTGGATTCTTGTAACCAACTCCATTCTCAATCTATTGCGGATTGTTCAATCCAACAAGGGGAATCTGAACCCATGGATGACCCAGAGGAAGAGGAGAGATTGAAGAAAAAAATGCACAATTCCCTGAAGAAGTTGGAGGACTCAGACTTCTATAACAAGTTCGCCGAACAGTTACAGAGTCCGCAAGTACTTAACAATATACTGAGGGCAGCCAATGCGGAATCAGAGCAGCAGATACAGATGGTGGTGTATGGGATTGGGAGCATCGCCAATTCAGAGAAATCCCGCTTGCAGTTATGTCTTGCATTGTTATTGAAGCGAAATTTCTCTTGGGTAGGCCGAATAGAGGTATTTGACCCAATTCTTTCTGCATCAGAATGTAGGATTATAGAGTCTTTGGGGTGTACTATTCTGACTGTTAATGAGCGAGGGAGGCGAACAGCAGAGAGCCCAACTCTTTTTTTCATGCCCCACTGTGCAGCTCTTCTCTATGACAATGTTCTCCGAGCGAATTGGAGTCCTGTGCTGTTGAACAGAATTATTTTGCTCGGTAACAGTTTTGGTTGCTACCGCGAACAGTTTTCCCAATTTCACAGGTCTCCTGTGGCTTCCACGAGCTATGTCCTGGCCATTGCAGATCACGTGAATGAATTTAGAATCCAGACTGTTTCAGATGATTTCTTTGCGGCTTTCCATCAGACGAGTTGGCATTTTTTTGCCTTGGATGCTTCACAAGATCTCAAAGTTCTGTCTGTATAA___CAAACTCATCATTGGATTATTAGCTGGTCTAGTCCCCTTTGAATGAGCTGCTTTTCTAAAACTAGATATGCTTTTGTAGAGATATGCCAAGCAACTAGAAGTTCCTCTCCTTATGGATCAACATGAATAACGGCTAGTACAATACTAATTTGGTAATACGAATAGCACAAATACTGCTTCTATGGTATGAATAACAGTGTTATTTATATTGTTTAACTAGAATTGTAATACAAGGTTATCTAGATTTACTTAAATAATATTTTAT

Fln Alignment:

AllPineV4_c1654___MPSEMGEEKAEISEEQKAEMAWTXXXXXXXXXXXXTNTNSN-AYGCTNLLDSCNQLHSQSIADCSIQQGXXXXXXXXXXXXRLKKKMHNSLKKLEDSDFYNKFAEQLQSPQVLNNILRAANAESEQQIQMVVYGIGSIANSEKSRXXXXXXXXXKRNFSWVGRIEVFDPILSASECRIIESLGCTILTVNERGRRTAESPTLFFMPHCAALLYDNVLRANWSPVLLNRIILLGNSFGCYREQFSQFHRSP
D5A9F1_______________MPAEWGEENAD--------MAWTVVVGRHRKGKRKTNTNNNNTYSCTNPLGSCDQVHSPSMTGCSIQQGESEPMDDPEEEERLKKKMHNCLKKLEDSDFYNKFVEQLQSPQVLNNILRAASAESEQQIQMVVYGIGSITNSEKSRLQLCLALLLKRNFSWVGRIEVFDPILSASECGIMESLGCTILAVNEQGMRTAESPTLFFMPHCAALLYDNVLRANWSPVLLNRIILLGNSFGSYLEQLSEFHRSP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
114			88	11	0.991528
115	88		11		0.991528
117	88		11		0.991528
118			11	88	0.991528
127		90	10		0.90298
128			10	90	0.90298
507		10		90	0.90298
786		80	20		0.995493
869		11		88	0.991528
870			11	88	0.991528
872	77	11			0.968132
874	88		11		0.991528
876		11		88	0.991528
878		88		11	0.991528
879	88			11	0.991528
881	88		11		0.991528
886		11		88	0.991528
1025	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain