SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28276

Length: 1612 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28276 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metallopeptidase M24-like protein [Arabidopsis thaliana] gb\|AAL84973.1\| AT3g05350/T12H1_32 [Arabidopsis thaliana] gb\|AAN46861.1\| At3g05350/T12H1_32 [Arabidopsis thaliana] gb\|AEE74224.1\| metallopeptidase M24-like protein [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	probable xaa-pro aminopeptidase p-like	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Creatinase	IPR000587	-	-
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site	IPR001131	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Rhodopsin, retinal binding site	IPR018229	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ47

Fln msg: your sequence is shorter than subject: 340 - 738

Fln protein: STKDSNMKLQEGKSLDIEMEGPVTIHRASPVALAKAIKNEAELDGMRQAHLRDAAALAEFWSWLETKVVHEKVLLTEVEVSEKLFEIRAKQAGFIDTSFDTISGSGANGAIIHYQAQPDTCSIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSQHRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYENITGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEKLTFVPIQSKLVDLSLVSAAEIEWLNNYHSEVWEKVSPLVDGDAREWLWKNTRPVSKHCKT*

Protein Length: 341

Fln nts: AGCACCAAAGATTCCAATATGAAATTACAAGAAGGGAAGTCCCTAGACATTGAGATGGAAGGACCTGTCACAATACATAGAGCTTCCCCAGTAGCACTTGCAAAGGCCATAAAAAATGAGGCAGAATTGGATGGGATGAGGCAAGCTCATTTGAGAGATGCTGCAGCTCTTGCTGAATTTTGGTCATGGCTGGAAACAAAAGTTGTTCATGAGAAAGTGCTTCTTACAGAAGTAGAAGTTTCAGAAAAGTTGTTCGAGATTCGGGCTAAGCAAGCTGGTTTTATTGATACAAGCTTTGACACAATAAGTGGCTCAGGAGCAAATGGGGCAATTATTCACTATCAAGCTCAACCAGATACCTGCAGCATTGTAGATGACAAGAATCTCTTCTTGCTAGACAGTGGTGGTCAATATGTCGATGGGACAACAGACATTACGAGGACTGTACACTTTGGAGAGCCTACTTCACAACATAGGGAATGCTTCACTAGAGTGTTGCAGGGCCATATAGCTCTTGACCAAGCACGATTTCCTGAAAATACTCCTGGTTTCGTGCTCGATGTATTAGCACGCTCCTCACTTTGGAAGATAGGACTGGATTACCGCCATGGTACAGGCCATGGAGTAGGAGCTGCACTGAATGTGCATGAAGGTCCTCAAAGTATCAGTTATCGGTATGAAAATATAACTGGTTTGCAAGGAGGCATGATTGTGAGTAATGAGCCTGGATACTATGAAGATCGATCCTTTGGCATTCGTATTGAGAATCTGCTAGTTGTACGAGAAGTTGAGACTCCAAATCGATTTGGAGGCATCACATATCTTGGATTTGAAAAGCTTACGTTTGTTCCTATCCAGAGTAAGCTAGTTGATCTGTCTTTGGTGTCAGCTGCAGAAATCGAATGGTTAAACAATTATCATTCAGAAGTCTGGGAAAAGGTTTCACCACTTGTGGATGGAGATGCTCGTGAGTGGCTTTGGAAGAACACAAGACCTGTTTCCAAACATTGTAAAACATAA___AGAACTTCTAAATATACAAGTGAGAGGAACACAAGCCCTGTCAGAATCAGGAAAAAAATACAAGACAATATTCTGTGGAGCGGATTTTGTGACTAAGAGGCACAGTGATATGTCGCAGTTGTACTATCGATAACAAAAATGTACGTGAAAAAGGTGCAAAACTGATTACTTATTCAGTCATGCTAAGACGATCAATGGGCAATAGATAGACAGACGAGAGATTGGATTCTCAGGCATGAATGTGTCATTGGTTTTGTTGCTCAGATTTCTAAATATGCATCATCAAATGAAGTTCACTTGTAAATCATGGGGGAAATGATATAATTTGTTGATATATCTTATTGTTGAAAATTGAATGTTCTTTATGTATAGGGAATTTGCATGAAAAGCACATGGCATTTTGTTCAAGGCTTCTTGTGAAATTGTTGAATATAATTAGTTTTTCCACAATGGCTCCCCTCTTGACTGGTGCATTTTGCTGCTAATTAAGATCACATGTTTATATCTGCTACTTGGCTTCTAACTGTGGTGGAATGTGCCAGATAATTTAGCAGTTGAGTAGAAGTAATTCTAACTTTTGAAATATATGTTG

Fln Alignment:

AllPineV4_c1576___STKDSNMKLQEGKSLDIEMEGPVTIHRASPVALAKAIKNEAELDGMRQAHLRDAAALAEFWSWLETKVVHEKVLLTEVEVSEKLFEIRAKQAGFIDTSFDTISGSGANGAIIHYQAQPDTCSIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSQHRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYENITGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEKLTFVPIQSKLVDLSLVSAAEIEWLNNYHSEVWEKVSPLVDGDAREWLWKNTRPVSKHCKT
C0PQ47_______________STKDSNMKLQEGNSLDIEMEGPVAIHRSSPVAHAKAIKNEAELDGMRQAHLRDAAALAEFWSWLETKVVHEKVLLTEVEVAEKLLEIRAKQAGFLDTSFDTISGSGANGAIIHYRAEPDTCNIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSRQRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQGISYRYENTTGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEKLTFVPIQSKLLDLSLVSAAEIEWLNDYHLEVWEKVSPLVDGDAREWLWKNTRPVSKHCTT

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1042	14		85	0.993533
1359	60	40		1.0
1381	50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain