SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28234

Length: 1475 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28234 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amidophosphoribosyltransferase n=1 Tax=Nicotiana tabacum RepID=Q6T7F3_TOBAC	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	amidophosphoribosyltransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidophosphoribosyltransferase.	EC:2.4.2.14	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	88%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	88%
Blast2go	amidophosphoribosyltransferase activity	GO:0004044	Molecular Function	88%
Blast2go	cell wall	GO:0005618	Cellular Component	88%
Blast2go	plastid stroma	GO:0009532	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Amidophosphoribosyl transferase	IPR005854	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 107 aas, atg_distance in limit (1-15): atg_distance = 13, your sequence is shorter than subject: 474 - 610

Fln protein: MAACSILRCAPKLCSNTLQNPTGPLQHYPQNCTAMHSDSFLPAHCLCSSVYSSHVPNTHKNLPSKIPTIAPRAHAGSPISQFFPQEEENDDVYSDDVIKEECGVVGIYGDPEAARLCYLSLHALQHRGQEGAGIVTATDGVLHTITGVGLVADVFDESKLNKLPGNSAIGHVRYSTAGSSMLKNVQPFVAGYKFGSLGVAHNGNLVNYQTLRARLEENGSIFNTSSDTEVVLHLIAISKARPFLQRIVNACEQLEGAYSMVFLSVDKLVAVRDPYGFRPLVMGRRKNGAVVFASETCALDLIEAKYEREVNPGEVVVVDKDGISSLCLLPHQQRKACIFEHIYFSLPNSLVFGRSVYHSRYTIGEILADETPVDCDVVIAVPDSGVVAALGYAAKANVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLAPVKAVLEGKRVVVVDDSIVRGTTSSKIVRLIKGEQTSSCELL*

Protein Length: 475

Fln nts: AAAA_-_ATGGCAGCATGTAGTATTCTTCGCTGCGCTCCAAAGCTCTGCTCAAATACACTCCAAAACCCTACTGGTCCTCTGCAACATTATCCCCAGAACTGCACAGCTATGCATTCGGACAGTTTCCTCCCAGCTCACTGTCTCTGCAGTTCTGTATACTCGTCGCATGTCCCCAATACCCACAAAAACTTACCCTCTAAAATCCCTACAATAGCCCCCAGAGCCCATGCAGGAAGCCCGATTTCGCAATTTTTTCCCCAAGAAGAAGAAAATGATGACGTCTATTCGGACGATGTTATAAAGGAAGAGTGTGGCGTGGTAGGAATTTATGGCGATCCGGAGGCGGCACGGCTCTGTTATTTATCCCTGCACGCCCTGCAGCACCGTGGTCAGGAGGGGGCAGGAATCGTAACCGCGACCGATGGGGTTTTGCATACCATAACCGGCGTGGGCCTCGTTGCTGATGTTTTCGACGAGTCCAAGCTCAACAAGCTGCCGGGGAACTCAGCCATCGGTCATGTGAGGTACTCTACTGCTGGTTCTTCTATGCTTAAAAATGTCCAGCCATTTGTGGCCGGCTATAAGTTTGGCTCTCTTGGTGTTGCGCATAATGGGAATTTAGTTAACTATCAGACCCTTCGGGCTAGGCTTGAAGAAAATGGTTCGATCTTCAATACTTCTTCCGATACAGAGGTTGTGCTTCACTTGATTGCTATATCGAAAGCTAGGCCGTTTTTGCAGCGGATTGTCAATGCATGCGAGCAGTTAGAGGGGGCTTATTCTATGGTTTTCCTTTCTGTGGATAAATTGGTGGCTGTCAGGGATCCGTATGGTTTTAGGCCCCTGGTCATGGGGAGGAGGAAGAATGGGGCTGTTGTTTTCGCCTCCGAGACCTGTGCACTGGATCTCATTGAGGCGAAGTATGAGAGAGAAGTGAATCCCGGGGAGGTCGTCGTGGTGGACAAGGATGGGATAAGTTCTCTGTGTTTACTGCCTCATCAGCAGAGGAAAGCCTGTATTTTTGAGCATATTTATTTTTCTTTGCCGAATTCGCTCGTCTTCGGGCGATCGGTTTACCATTCCAGGTACACTATCGGTGAGATCCTCGCCGATGAAACTCCGGTGGATTGTGATGTAGTCATTGCGGTGCCAGACTCAGGGGTTGTCGCTGCACTTGGTTATGCTGCCAAGGCAAATGTGCCTTTCCAACAGGGCCTGATTAGGAGTCACTATGTGGGGAGAACGTTTATAGAGCCTTCTCAGAAGATTAGGGATTTTGGAGTGAAGCTGAAGCTTGCACCGGTGAAGGCGGTCTTGGAGGGCAAGAGGGTGGTTGTGGTCGATGATTCAATTGTGAGGGGCACAACTTCGTCCAAGATTGTGAGGTTGATTAAAGGAGAACAAACAAGCTCATGTGAACTTCTTTAGCCCCTGCTCCTTTAATCAACCTCACAATCTTGGACGAAGTTGTGCCCCT

Fln Alignment:

AllPineV4_c599___DDVIKEECGVVGIYGDPEAARLCYLSLHALQHRGQEGAGIVTATDGVLHTITGVGLVADVFDESKLNKLPGNSAIGHVRYSTAGSSMLKNVQPFVAGYKFGSLGVAHNGNLVNYQTLRARLEENGSIFNTSSDTEVVLHLIAISKARPFLQRIVNACEQLEGAYSMVFLSVDKLVAVRDPYGFRPLVMGRRKNGAVVFASETCALDLIEAKYEREVNPGEVVVVDKDGISSLCLLPHQQRKACIFEHIYFSLPNSLVFGRSVYHSRYTIGEILADETPVDCDVVIAVPDSGVVAALGYAAKANVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLAPVKAVLEGKRVVVVDDSIVRGTTSSKIVRLIK
B8LMG0_______________DDVFREECGVIGIYGDEEASRLCYLALHALQHRGQEGAGIVTARSGVLKAETGIGLVSDVFNEMKLSQLKGALAIGHVRYATAGASEARNVQPFVAGYRFGSVAVAHNGNLVNYKALRAVLEENGSIFNTSSDTEVVLHLIATSTARPFISRLVDACERLEGAYSLVFLTEEKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIDAEYEREVNPGEVVVVDKDGMSSLCLLPQKQRKSCVFEHIYFALPSSVVFGRSVYESRYEFGQILAEDAPTDCDVVIAVPDSGVVAALGYAAKARLPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLAPVHAVLEGKRVVVVDDSIVRGTTSSKIVRLIR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1326			75	25	0.996473
1474		25		75	0.996473
1475	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain