SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28230

Length: 2342 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene28230
TCCTCTTCGACTGTCAATTCAATTCTGTGCAGTTTCAAGTTCGGATCGTTCTGGTGAATCAATCTATAGGCAATGGAGGCGTTCAATCAACATCTGTCCGCGCAGCCATTTGCAGCCAGATTTGTGGAGATGGTCATATGCCTAACCTTGTTCACGGCTATGGTCTCGGCGAAGCTACACACTCACATATTCGTTCTTCGCTCTACACCTGTGAAAAGGTTATGTGGGACACACAATATCATCACTGTGAACGGACAGTTCCCGGGTCCTACGCTGCATGTTAGAAACGGAGACAAACTTAAAGTCAAAGTGCACAACCAGGCGCAATATAACGCTACCATTCATTGGCACGGAGTGCGGCAATTTCGCACAGGGTGGTCCGATGGACCTGAATTTATAACACAATGCCCCATTCGCCCAGGGCGAAGTTACACATATAAATTCACCGTCACTGGTCAAGAAGGGACTCTATGGTGGCATGCACACAGTTCATGGCTTCGAGCTACTGTGTATGGAGCCTTGATCATCTTGCCAAGGCTGGACACCACTTATCCCTTTACCTTTACTAGGCCGCATCGCCAGATTCCCATTCTTCTAGGAGAATGGTGGAATAGGAATCCCATGGATGTTGTGAATCAAGCAACCCGCACAGGAGCTGCCCCCAACGTTTCAGATGCTTTTACTATAAATGGACAACCAGGCGACCTATACAAATGTTCTACTTCAGATACCTTTAGCGTCTCGATGAAAGGTGGGGAAACTAATCTTCTACGTGTTATCAACGCTGCACTCAATACTGACCTATTCTTCTCCATTGCTAGCCATACAATGACAGTTGTCGCTGTGGATGCCTTGTATACCAAACCTTTTCAGACGAATGTTCTGATGCTCGGCCCCGGCCAGACAACAGACATACTTCTCACTGCCAATCAGGCTACAGGTAGATACTACATGGCTGCTCGAGCATATTCCAGCGGGCAAGGAGTTCCCTTCGATAACACCACTACCACTGCCATTTTAGAATACGAGGGAAGCTCTAAGACTTCAACTCCAGTCATGCCTAATCTTCCATTCTATAACGACACCAACAGTGCTACTAGCTTCGCTAATGGTCTTAGAAGCTTGGGCTCACACGACCACCCAGTCTTCGTTCCTCAGAGTGTGGAGGAGAATCTGTTCTACACCATCGGTTTGGGGTTGATCAAATGTCCAGGGCAGTCTTGTGGAGGTCCCAACGGATCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTCCCGCCAACCACTTCTTCCATCCTTCAAGCTCAGCATTTTGGCATGAAAGGAGTATTCTCCGCGGACTTCCCCGATAACCCTTCCGTGGGATTTGATTATACCGCATAGAACATCAGCAGAGGCCTCTGGTCCCCTGTGAAAGCCACAAGAGTGAAAGTTCTTAAATATAACTCGACGGTGCAAGTAATTCTTCAAGGAACCAATATATTTGCGGGTGAAAGCCGTCCTATCCATCTCCATGGTTACAACTTATGACTTCTACTTCGTGGGAGAAGGCTTTGGCAATTATAATGCACAAACCGATCCTCAGAAGTTCAACCTGGTGGATCCTCCTATGCGCAACACTGTGAACGTTCCAGTCAATGGCTGGGCTGCAATAAGATTCGTGGCTGACAATCCTGGCGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACATGGGGATTGGCCATGGTGTTTGTGGTTAACAATGGACCTGACGCTCTTTTGAGTCTCCAGTCACCTCCCAGAGATCTTCCGCTATGTTGAGGAAAACTGTGATGCATAGCGATCCTTTATTGGTCCCACTTCATTCTTTTTCCTTCTCGTCACTTCGCTCCTTCAATCGTTTATGTCTATCTTGGGATCCCCACTTGTTATGACAAAGTTCCGCGCCATTATTTGTATTCACATTCAGTGGCAATTCGTGGAAATTTTTATATCTAATGCAGTCACACGAGCATAATTTCGCGATTGCTCCATTCTTGTCACCAGTACGTGAATGAGAATATTCTAATGTAGAAAAATAAATAAACATAATGAACAAAGCACAAAATCATGAGTTGAACGAGTTCCAGTGCAAGTAAATCATTCATTTTTACACTGTCGCCTCTGTATTAAAACGTCAATATTACTCATAATTAAATATTTATATGGAAAATTTTCTAGACTCCGTGGAGTTACCTCTGTTCATTGATGATTGATTTGAACGCTGAATTAACGATTGTTCATTGTGTGGGAGTGTGGAGATCAGCATAATGAGCCAAAGTGCACTCATATGAACATCAGTTATTATTACCTA

Ace file of the UniGene sp_v2.0_unigene28230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=3 Tax=Pinus RepID=F4MKL7_PINPS	-	-	99%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	laccase 12	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AUI5

Fln msg: Separated hits, possible frame ERROR between 1527 and 1529,

Fln protein: MEAFNQHLSAQPFAARFVEMVICLTLFTAMVSAKLHTHIFVLRSTPVKRLCGTHNIITVNGQFPGPTLHVRNGDKLKVKVHNQAQYNATIHWHGVRQFRTGWSDGPEFITQCPIRPGRSYTYKFTVTGQEGTLWWHAHSSWLRATVYGALIILPRLDTTYPFTFTRPHRQIPILLGEWWNRNPMDVVNQATRTGAAPNVSDAFTINGQPGDLYKCSTSDTFSVSMKGGETNLLRVINAALNTDLFFSIASHTMTVVAVDALYTKPFQTNVLMLGPGQTTDILLTANQATGRYYMAARAYSSGQGVPFDNTTTTAILEYEGSSKTSTPVMPNLPFYNDTNSATSFANGLRSLGSHDHPVFVPQSVEENLFYTIGLGLIKCPGQSCGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTA*NISRGLWSPVKATRVKVLKYNSTVQVILQGTNIFAGESRPIHLHGYxxYDFYFVGEGFGNYNAQTDPQKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMVFVVNNGPDALLSLQSPPRDLPLC*

Protein Length: 581

Fln nts: TCCTCTTCGACTGTCAATTCAATTCTGTGCAGTTTCAAGTTCGGATCGTTCTGGTGAATCAATCTATAGGCA_-_ATGGAGGCGTTCAATCAACATCTGTCCGCGCAGCCATTTGCAGCCAGATTTGTGGAGATGGTCATATGCCTAACCTTGTTCACGGCTATGGTCTCGGCGAAGCTACACACTCACATATTCGTTCTTCGCTCTACACCTGTGAAAAGGTTATGTGGGACACACAATATCATCACTGTGAACGGACAGTTCCCGGGTCCTACGCTGCATGTTAGAAACGGAGACAAACTTAAAGTCAAAGTGCACAACCAGGCGCAATATAACGCTACCATTCATTGGCACGGAGTGCGGCAATTTCGCACAGGGTGGTCCGATGGACCTGAATTTATAACACAATGCCCCATTCGCCCAGGGCGAAGTTACACATATAAATTCACCGTCACTGGTCAAGAAGGGACTCTATGGTGGCATGCACACAGTTCATGGCTTCGAGCTACTGTGTATGGAGCCTTGATCATCTTGCCAAGGCTGGACACCACTTATCCCTTTACCTTTACTAGGCCGCATCGCCAGATTCCCATTCTTCTAGGAGAATGGTGGAATAGGAATCCCATGGATGTTGTGAATCAAGCAACCCGCACAGGAGCTGCCCCCAACGTTTCAGATGCTTTTACTATAAATGGACAACCAGGCGACCTATACAAATGTTCTACTTCAGATACCTTTAGCGTCTCGATGAAAGGTGGGGAAACTAATCTTCTACGTGTTATCAACGCTGCACTCAATACTGACCTATTCTTCTCCATTGCTAGCCATACAATGACAGTTGTCGCTGTGGATGCCTTGTATACCAAACCTTTTCAGACGAATGTTCTGATGCTCGGCCCCGGCCAGACAACAGACATACTTCTCACTGCCAATCAGGCTACAGGTAGATACTACATGGCTGCTCGAGCATATTCCAGCGGGCAAGGAGTTCCCTTCGATAACACCACTACCACTGCCATTTTAGAATACGAGGGAAGCTCTAAGACTTCAACTCCAGTCATGCCTAATCTTCCATTCTATAACGACACCAACAGTGCTACTAGCTTCGCTAATGGTCTTAGAAGCTTGGGCTCACACGACCACCCAGTCTTCGTTCCTCAGAGTGTGGAGGAGAATCTGTTCTACACCATCGGTTTGGGGTTGATCAAATGTCCAGGGCAGTCTTGTGGAGGTCCCAACGGATCAAGATTTGCAGCAAGTATGAATAACATATCATTTGTCCCGCCAACCACTTCTTCCATCCTTCAAGCTCAGCATTTTGGCATGAAAGGAGTATTCTCCGCGGACTTCCCCGATAACCCTTCCGTGGGATTTGATTATACCGCAtAGAACATCAGCAGAGGCCTcTGGTCCCCtGTGAAAGCCACAAGAGTGAAAGTTCTTAAATATAACTCGACGGTGCAAGTAATTCTTCAAGGAACCAATATATTTGCGGGTGAAAGCCGTCCTATCCATCTCCATGGTTACAAxxxTTATGACTTCTACTTCGTGGGAGaAGGCTTTGGCAATTATAATGCACAAACCGATCCTCAGAAGTTCAACCTGGTGGATCCTCCTATGCGCAACACTGTGAACGTTCCAGTCAATGGCTGGGCTGCAATAAGATTCGTGGCTGACAATCCTGGCGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACATGGGGATTGGCCATGGTGTTTGTGGTTAACAATGGACCTGACGCTCTTTTGAGTCTCCAGTCACCTCCCAGAGATCTTCCGCTATGTTGA___GGAAAACTGTGATGCATAGCGATCCTTTATTGGTCCCACTTCATTCTTTTTCCTTCTCGTCACTTCGCTCCTTCAATCGTTTATGTCTATCTTGGGATCCCCACTTGTTATGACAAAGTTCCGCGCCATTATTTGTATTCACATTCAGTGGCAATTCGTGGAAATTTTTATATCTAATGCAGTCACACGAGCATAATTTCGCGATTGCTCCATTCTTGTCACCAGTACGTgAATGAGAATATTCTAATGTAGAAAAATAAATAAACATAATGAACAAAGCACAAAATCATGAGTTGAACGAGTTcCAGTGCAAGTAAATCATTCATTTTTACACTGTCGCCTCTGTATTAAAACGTCAATATTACTCATAATTAAATATTTATATGGAAAATTTTCTAGACTCCGTGGAGTTACCTCTGTTCATTGATGATTGATTTGAACGCTGAATTAACGATTGTTCATTGTGTGGGAGTGTGGAGATCAGCATAATGAGCCAAAGTGCACTCATATGAACATCAGTTATTATTACCTA

Fln Alignment:

AllPineV4_c461___MEAFNQHLSAQPFAARFVEMVICLTLFTAMVSAKLHTHIFVLRSTPVKRLCGTHNIITVNGQFPGPTLHVRNGDKLKVKVHNQAQYNATIHWHGVRQFRTGWSDGPEFITQCPIRPGRSYTYKFTVTGQEGTLWWHAHSSWLRATVYGALIILPRLDTTYPFTFTRPHRQIPILLGEWWNRNPMDVVNQATRTGAAPNVSDAFTINGQPGDLYKCSTSDTFSVSMKGGETNLLRVINAALNTDLFFSIASHTMTVVAVDALYTKPFQTNVLMLGPGQTTDILLTANQATGRYYMAARAYSSGQGVPFDNTTTTAILEYEGSSKTSTPVMPNLPFYNDTNSATSFANGLRSLGSHDHPVFVPQSVEENLFYTIGLGLIKCPGQSCGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTA*NISRGLWSPVKATRVKVLKYNSTVQVILQGTNIFAGESRPIHLHGYNxYDFYFVGEGFGNYNAQTDPQKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMVFVVNNGPDALLSLQSPPRDLPLC
Q9AUI5_______________MEAFNQHLSAQPFAARFVEMVICLTLFTAMVSAKLHTHIFVLRSTPVKRLCGTHNIITVNGQFPGPTLHVRNGDKLKVKVHNQAQYNATIHWHGVRQFRTGWSDGPEFITQCPIRPGRSYTYKFTITGQEGTLWWHAHSSWLRATVYGALIILPRLDTTYPFTFTRPHRQIPILLGEWWNRNPMDVVNQATQTGAAPNVSDAFTINGQPGDLYKCSTSDTFSVSMKGGETNLLRVINAALNSDLFFSIGSHTMTVVAVDALYTKPFQTNVLMLGPGQTTDILLTANQATGRYYMAARAYSSGQGVPFDNTTTTAILEYEGSSKTSTPVMPNLPFYNDTNSATSFANGLRSLGSHDHPVFVPQSVEENLFYTIGLGLIKCPGQSCGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDxYDFYIVGAGFGNYNAQTDPHKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMVFVVNNGPDALLSLQSPPRDLPLC

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
192		50		50	1.0
201	50	50			1.0
241	85		14		0.993533
246			14	85	0.993533
314	10		90		0.90298
326			80	20	0.999996
363	30		70		1.0
424		22	77		0.999999
850		33	66		1.0
888	33			66	0.999997
1050		20		80	0.995493
1133		16	83		0.995451
1139	83		16		0.995451
1140	33	66			1.0
1148		66	33		1.0
1152		66		33	1.0
1164			66	33	1.0
1182			83	16	0.995451
1195			66	33	1.0
1202		33	66		1.0
1214			80	20	0.996423
1215		20		80	0.996423
1259		77		22	1.0
1260	88		11		0.992527
1264	88		11		0.992527
1273	88		11		0.992527
1279		22		77	1.0
1286		83		16	0.995451
1287	16		83		0.995451
1297	16			83	0.995451
1302	16	83			0.995451
1318		66		33	1.0
1378	16		83		0.995451
1380	16			83	0.995451
1381			16	83	0.995451
1383	16	16		66	0.992378
1385		83		16	0.995451
1386		83		16	0.995451
1387	16		83		0.995451
1390		50		50	1.0
1410	50	50			1.0
1419	33			66	1.0
1664	66			33	0.997452
1667	66		33		0.997452
1668	66		33		0.997452
1720	16		83		0.994512
1723		83	16		0.994512
1724	83		16		0.994512
1737	83		16		0.994512
1744		83	16		0.994512
1750		16	66	16	0.988813
1850		33		66	0.997452
1874		25		50	0.995533
1895		25		75	0.996481
1970	25	75			0.996478
1982	20		80		0.995493
1983		20		80	0.995493
2034	25	75			0.996473
2049		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain