SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28183

Length: 283 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene28183
TTGATGCTTTTGTTGCTGCATGGCTTCCTGGCACTGAGGGCCAAGGTGTGACAGATGTGATTTTTGGAGATTATGGGTTTCAAGGGAAGCTTCCAAGAACATGGTTTAAAAGTGTTGACCAACTACCCATGAATGTAGGTGACAAACATTATGATCCCTTGTTTCCCTTAGGTTTTGGATTGACCACATTATAGCTGAAAAATTAAAGTAGTCATTTAGGTTTTCCCATATTTTATTTAAAATAATTAATATGTAGTTCCCATGATATCAATTTTATGACGTG

Ace file of the UniGene sp_v2.0_unigene28183 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell wall beta-glucosidase [Secale cereale]	-	-	8.0e-22	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	glycosyl hydrolase family 3 n terminal domain containing expressed	-	-	1.681e-28	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	1.681e-28	93%

Source	KEGGs	Term	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	1.681e-28	93%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.681e-28	93%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.681e-28	93%
Blast2go	Glycosaminoglycan degradation	00531	1.681e-28	93%
Blast2go	Metabolic pathways	01100	1.681e-28	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	1.681e-28	93%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: your sequence is shorter than subject: 64 - 631

Fln protein: DAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLTTL*

Protein Length: 65

Fln nts: TTGATGCTTTTGTTGCTGCATGGCTTCCTGGCACTGAGGGCCAAGGTGTGACAGATGTGATTTTTGGAGATTATGGGTTTCAAGGGAAGCTTCCAAGAACATGGTTTAAAAGTGTTGACCAACTACCCATGAATGTAGGTGACAAACATTATGATCCCTTGTTTCCCTTAGGTTTTGGATTGACCACATTATAG___CTGAAAAATTAAAGTAGTCATTTAGGTTTTCCCATATTTTATTTAAAATAATTAATATGTAGTTCCCATGATATCAATTTTATGACGTG

Fln Alignment:

Contig28183___DAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYD
A9NUD1_______________DAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain