SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28172

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28172

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAN72050.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP37762.1\| At3g18890 [Arabidopsis thaliana] gb\|AEE76164.1\| Rossmann-fold NAD(P)-binding domain-containing protein [Arab	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	tic62 protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	68%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW13

Fln msg: your sequence is longer than subject: 492 - 382

Fln protein: MEALSCPFTYYYSMITGPGIVLEQPFVGTQRLRMANKKQGAFLKRRLMLQELRAQTSGTVRTTNETASDTYKEEPKEFQKSATTSGVEGKSKDNQLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSLQKANALLESVRQLKLDSQDAVPSAPVGPTTEQKIEIVECDLEKPDEIGLAISNAGVVVCCIGASEKEVFDVTGPYRIDYQATKNLIDAATVAKVNHFILLTSLGTNKVGFPAALLNLFWGVLIWKRKAEQALINSGLPYTIVRPGGMERPTDAYKETHNLVLASADTYFGGQVSNLQVAELIACMAKNRELCMNNVVEVIAETTALLLPMEELLASLSSANGVSKFSSQEKELTEVVKSASETQSSVEQDLLQSAVSAVPEKAELQMVSEKSRPPSPYTMYEDLKPPTSPCPSTPNLSRSERSVTAAVESPPQNQFSKLPVIAERGAAQKEEVQISHSQSRPLSPYPMYEDLKPPASPSPTLK*

Protein Length: 493

Fln nts: AGTTGCGTAGAGTGGG_-_ATGGAGGCATTATCATGTCCATTCACATATTATTATTCCATGATTACAGGGCCAGGCATTGTATTAGAACAACCATTTGTGGGTACTCAGAGGCTGAGAATGGCCAACAAGAAGCAGGGAGCATTCCTAAAACGAAGGCTAATGTTGCAAGAATTGCGAGCTCAAACTTCAGGCACCGTGAGGACAACGAATGAAACAGCCTCTGACACTTACAAGGAAGAACCGAAGGAATTTCAGAAATCAGCAACAACTTCAGGTGTGGAAGGGAAATCTAAAGACAACCAGCTTGTATTTGTTGCAGGAGCTACTGGTAAAGTTGGTTCACGCACTGTCAGGGAACTTTTGAAGCTGGGTTTTCGTGTAAGGGCAGGTGTCAGGAGTTTACAGAAGGCAAATGCATTGCTTGAGAGTGTACGACAACTAAAACTAGATTCTCAAGATGCTGTTCCTTCTGCGCCAGTTGGTCCAACTACAGAACAGAAGATTGAGATTGTTGAGTGTGACCTGGAGAAACCAGATGAAATTGGATTAGCGATAAGCAATGCAGGTGTGGTAGTATGTTGCATAGGTGCAAGTGAGAAGGAAGTTTTTGATGTAACTGGACCGTACCGCATTGACTATCAGGCAACTAAAAACCTTATTGATGCAGCAACTGTAGCAAAAGTTAATCACTTCATTCTCTTGACATCGTTGGGAACAAATAAAGTTGGATTTCCTGCAGCATTATTGAACCTGTTTTGGGGTGTTCTCATATGGAAAAGAAAAGCAGAACAAGCATTGATTAATAGTGGTCTTCCATACACTATTGTGAGGCCTGGAGGCATGGAACGCCCAACAGATGCTTATAAGGAAACCCACAACCTTGTTCTCGCTAGTGCCGACACATATTTTGGTGGTCAGGTGTCAAACCTGCAGGTTGCAGAACTCATTGCATGCATGGCAAAAAATAGAGAGCTTTGCATGAATAATGTGGTTGAAGTGATTGCTGAGACAACGGCTCTATTGCTTCCCATGGAAGAACTTCTTGCTAGTCTATCATCAGCAAATGGTGTTTCGAAATTTTCCTCACAGGAAAAAGAACTTACTGAGGTTGTAAAATCAGCTTCAGAGACCCAGTCTTCAGTGGAACAGGACCTTCTGCAATCTGCTGTTAGTGCTGTTCCAGAGAAGGCTGAACTCCAGATGGTTTCAGAGAAATCGAGACCTCCTTCTCCTTACACAATGTATGAGGATTTAAAACCACCAACCTCACCCTGTCCAAGTACTCCAAACCTATCCCGTAGTGAAAGATCCGTGACAGCAGCTGTTGAATCACCTCCACAGAATCAGTTCTCAAAGTTACCTGTCATAGCTGAGCGTGGTGCTGCACAGAAGGAAGAGGTCCAGATTTCTCACTCACAATCAAGACCACTCTCCCCATATCCAATGTACGAGGACTTGAAACCACCGGCTTCTCCAAGTCCAACTCTAAAGTAG___GGCTGATATCACTAGTTTGAAGAGGATCCGACCTTAGAAAATGAACAAAACAATTGGCTCTGCAAAGAAGAGTAAGTTACATTGGCCACCAGTATGAAATATAAATTTCTAGAAAACAGGTATTCCATA

Fln Alignment:

Contig28172___VAGATGKVGSRTVRELLKLGFRVRAGVRSLQKANALLESVRQLKLDSQDAVPSAPVGPTTEQKIEIVECDLEKPDEIGLAISNAGVVVCCIGASEKEVFDVTGPYRIDYQATKNLIDAATVAKVNHFILLTSLGTNKVGFPAALLNLFWGVLIWKRKAEQALINSGLPYTIVRPGGMERPTDAYKETHNLVLASADTYFGGQVSNLQVAELIACMAKNRELCMNNVVEVIXXXXXXXXXXXXXXXXXXXXNGVSKFSSQEKELT-EVVKSASETQSSVEQDLLQSAVSAVPEKAELQMVSEKSRPPSPYTMYEDLKPPTSPCPS
A9NW13_______________VISEPGKVGSRTVRELLKLGFRVRACVRSLQKANALLESVAQLKLDSQDAVPSAPVGPTTEQKIEIVECDLEKPDEIGSAISNAGVVVCCIGASEKEVFDVTGPYRIDYQATKNLIDAATVANVNHFILLTSLGTSKVGFPAALLNLFWGVLIWKRKAEQALINSGLPYTIVRPGGMERPTDAYKETHNLVLASADTYFGGQVSNLQVAELIACMTKNRELSMNKVIEVIAETTAPLLPMEELLASLSSANVVSKFYSQEKELTKELVKSASEPQSLVEQDPLQSAFSSVPEKAELQISHSHSRPLSPYPMYEDLKPPASPSPT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
644	33		33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain