SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28148

Length: 825 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene28148 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Water-stress inducible protein 3 (Fragment) n=8 Tax=Pinus RepID=E0A703_PINPS	-	-	9.0e-31	82%
FL-Next	tr=Water deficit inducible protein LP3; Pinus taeda (Loblolly pine).	-	-	0.0	87%
Blast2go	water-stress inducible protein 3	-	-	9.75545e-39	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABA/WDS induced protein	IPR003496	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
39	25			75	0.996473
47		75		25	0.996473
50	25		75		0.996473
75	75	25			0.996473
80	75	25			0.996473
81		25		75	0.996473
82		25	75		0.996473
101	66	33			0.997452
290		66		33	0.99834
806		20	20	60	0.99255
807		20	60	20	0.99255
808	75	25			0.996473
809	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain