SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene28117

Length: 1410 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene28117

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	20%
Blast2go	protein	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Zinc finger, LIM-type	IPR001781	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L7

Fln msg:

Fln protein: NSLPYSIEIVDCVDVEMYVETLRLMYSYCCSGGDLNLKRRLMGESVYRVLRILQASVAVAFEAGVLSCLEYLEAVPWTQEEEDKVLSSLMQLHHLKDDSNMQGAGQVLKRVLASGDSSKVNGSDQEEVLLHVLQLVMKANNEKARRELKALVSKMLRETAAAQGYLNSSDLSTASLYHACRSCLDLLSHSFMQATRAQFMESSTTSSEDRGSIARQIARQADNLHWLLDILIDRGIADDFVCMWANQSELAAMHGEVPAMFRYEVSGVTARLCIGIGKGQMLACGSDIRVLLLQRWLQPLVDDFGWMQRACKSLDMKVVEEGICQTILTLPLKNQEAILINWLNHFLNNAHDCPNLQKAFEVWWRRAFIRPYFTHSHQNC*

Protein Length: 382

Fln nts: AATTCTCTTCCTTATTCAATCGAAATTGTGGACTGCGTTGATGTGGAGATGTATGTTGAGACTCTGCGTCTCATGTACTCGTACTGCTGCAGCGGTGGGGATTTGAATTTGAAGCGGAGGTTGATGGGAGAAAGTGTTTACAGAGTCCTGCGGATTTTGCAGGCTTCAGTCGCCGTTGCCTTTGAAGCGGGCGTGTTGTCATGCTTGGAATACTTGGAAGCAGTGCCTTGGACACAAGAAGAAGAGGACAAGGTACTTTCATCTCTAATGCAACTGCACCATTTGAAAGATGATAGCAATATGCAGGGAGCGGGCCAGGTTTTGAAACGGGTATTGGCATCTGGAGATTCAAGTAAAGTAAATGGGTCTGACCAAGAAGAAGTTCTCCTCCATGTTCTACAGCTGGTAATGAAAGCAAACAACGAAAAAGCCAGACGAGAATTGAAAGCCCTGGTTTCCAAAATGCTGAGAGAAACAGCAGCAGCTCAGGGGTACTTGAACTCATCTGATTTGAGTACTGCAAGTCTTTACCATGCCTGTCGTAGCTGCCTGGATCTACTCTCCCATAGCTTTATGCAAGCTACCAGAGCTCAGTTCATGGAGTCCAGTACTACTTCCAGTGAGGACAGAGGTTCAATTGCTCGTCAAATAGCCAGGCAAGCAGACAATCTTCATTGGCTGCTTGATATTTTGATTGATAGAGGGATAGCAGATGATTTTGTATGCATGTGGGCTAATCAGTCAGAGCTAGCAGCCATGCATGGGGAGGTACCAGCAATGTTTCGTTACGAAGTGAGTGGTGTTACTGCAAGACTGTGCATTGGGATAGGGAAGGGGCAGATGTTGGCATGTGGGTCTGATATTCGGGTGCTCTTGCTACAAAGGTGGCTGCAGCCCCTCGTTGATGACTTCGGTTGGATGCAGAGGGCCTGCAAATCTCTGGACATGAAGGTTGTTGAGGAGGGAATATGCCAAACAATTCTCACTTTGCCTCTTAAAAACCAGGAGGCCATCTTGATCAATTGGTTGAATCACTTTCTCAACAATGCCCATGACTGTCCCAATCTACAGAAAGCATTTGAGGTGTGGTGGAGAAGAGCCTTTATAAGGCCTTATTTCACACACAGCCATCAAAACTGTTAA___ATAGATAGAACCATCCTCACTTCTTGCCAGTATGGAAAGTGGATTCCCATGCCTTCTTTTTAGTAGATAGAAATAATTCTGGTTAAATATTTTAGTGTATAACTAAATTaTGAAAATTTTCATATATGCTTTTGGCAGGTTTTTCAGTCCACATGGAGACATCTACAGTTGTCTATATATTGTGAAGAAATGTGATTAAATTGATACACATTGATAACAATGATGACCTTACATTGAGCTTTACTCACGTACTTGTAATATATATAA

Fln Alignment:

Contig28117___PYSIEIVDCVDVEMYVETLRLMYSYCCSGGDLNLKRRLMGESVYRVLRILQASVAVAFEAGVLSCLEYLEAVPWTQEEEDKV--LSSLMQLHHLKDDSNMQGAGQVLKRVLASGDSSKVNGSDXXXXXXXXXXXXMKANNEKARRELKALVSKMLRETAAAQGYLNSSDLSTASLYHACRSCLDLLSHSFMQATRAQFMESSTTSSEDRGSIARQIARQADNLHWLLDIL--IDRGIADDFVCMWANQSEL------AAMHGEVPAMFRYEVSGVTA-RLCIGIGKGQMLACGSDIRVLLLQRWLQPLVDDFGWMQ-RACKSLDMKVVEEGICQTILTLPLKNQEAILINWLNHFLNNAHDCPNLQKAFEVWW
A9P2L7_______________PFEIKVTNSHNRENYIRCIQLLYSF-------QEDQRFYFSSVDDALAILPVASQIMFHDCIQSCMLYLDAVRWSPEQKAKLRALLTSLKLDILPELGNRLG-------ILGKSDSDHI---------------------EMLKDSLQELLCRTLN---VKDGFRNTAEKHMSEYFKA------EASPAVKDACRSALLKEFSGDVERIKSEDKNIELYWNRLSWLVGVIQSCDGKLFETVLKLFCEDTNLRNSINEKALHG-----FAYFILNILCNRFLKAMGNGDIIT-PSSFRVFFLTNWVETMVHVSTWSRFETC-------YDTGIIEVAETLPLVEQKRIYDIWKDALIKHSR---STSIAFN-WW

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
828	80		20		0.995493
863			16	83	0.994512
891		16	83		0.994512
892		83	16		0.994512
893	83			16	0.994512
895	16	83			0.994512
898		83		16	0.994512
900		83	16		0.994512
902		16		83	0.994512
907		16	83		0.994512
1257	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain